Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0476 ATGGGCGTCATGGTGGATTATTCTGATTTGAGCAAGATCCCTGAACCAGGCAGTGTCATGACTGAGAATAAAGCTTACAAAAATCGGCTAATTGCATCTCATCCTAAAAGTTTTGTACGGATAAACTATGGACATCTCATTTCGCTGGTCCATGGCCGCTTTGGAAGTAGTGCTATGGGTcgtatcacattttttttacttaaagttGCTGCGTTAGAGATCATCAGGAGGTTCTCCAAGAGCAGATGCCCATGTGTATGGCGAGGCCTTCAGGCTCTACAAATCGTATGTTATCCACCTTTTAAATGGATTCAGAGGTGGGCACCCTTCAAGGGTTTGGTTGAAAGCATGCAgGTCCTATCAAGACCATTGCTAGCCCTTTCAGTTGCAACGTTGTTTTCTGATCAATCAAGATGTAGTGATGGAAAGTCCGATTGTAATACTGATTCACAAGATGCAGTAGCATACTCAGAACTAACTCCTTTACAGGTTGATTTGAATACAAGCCAGTGTTTGACAGATCCTAAAATTTTAGAATCTGAGAAGTGGTTGACTCAACTCAATCAAGAGCTTGAAAATCAAGGGCTTAGTTTACCAGAAAGAATCAATGATGACGAGCTTCACAGATTTTATGCAGCTTCTAATAATGATTTTTCACGCTTTCTTACCTCAATCAAGAAGACCATACGATGGCGAGAGACTTACAGAATTCTTTCAGAAGAAGAGCTGAAAATGTGGTCAAAATTGGTGTTCTGGCACGGGTCTGATGTGAGGCACAGACCTTGCCTAATTGTAAGGCTTGGGTTAGCCTACAATACGTTGACATCCGAAGATAGACCTCGATTTGGTCAGGCAATCATATCACAGGTAGAATATGGAGTCTTGCACTTGGTTGATGCAGACAACCCTCAAATTACAGTGTTGGTGGATTGTGAAGGGTTGTCTCCAGAGAGAATTCCCATGCAAATAATAAGATCTTGTTCTTCCCTTCTGCAAGACCACTTTCCTAATCGTCTTGGTTGTATGTTTGTCATACGACTGCCAGCCGTTGTTCATGTTATTGCGCAGACTTTTATTCAGGATTTGAAGCCTGCTACTAGAAACAAGTTGAAAATAGAAGGGGAAATGCATCAGAAAGTTCTTTCTGACTATCTGCCAATACTGCCTTCATTTCTCGGAGGCTGCTGCACTTGCATGAAATGCTCTAACATTGGCAAGTGGGATATGCTGCAACCTTATGCAACAGGGACCAGCGGGAGAGACGGGGTGGTGGATACCAGTGACAGTGACAGTGACAATGAGGATTCTCCAACATTGCATCCTTCCGATGAATTAGAAGGCGGCTTATATGGCAATTATGACCAGTTGTTGAGAACTGCTATCGTAGGTATTCTCATATTTTGGGTTTTTATAGCTCTTGGTGTTGTAGTATTTGATCCCAGTAATGATCATTTGCCCTCATAA 1464 0.4173 MGVMVDYSDLSKIPEPGSVMTENKAYKNRLIASHPKSFVRINYGHLISLVHGRFGSSAMGRITFFLLKVAALEIIRRFSKSRCPCVWRGLQALQIVCYPPFKWIQRWAPFKGLVESMQVLSRPLLALSVATLFSDQSRCSDGKSDCNTDSQDAVAYSELTPLQVDLNTSQCLTDPKILESEKWLTQLNQELENQGLSLPERINDDELHRFYAASNNDFSRFLTSIKKTIRWRETYRILSEEELKMWSKLVFWHGSDVRHRPCLIVRLGLAYNTLTSEDRPRFGQAIISQVEYGVLHLVDADNPQITVLVDCEGLSPERIPMQIIRSCSSLLQDHFPNRLGCMFVIRLPAVVHVIAQTFIQDLKPATRNKLKIEGEMHQKVLSDYLPILPSFLGGCCTCMKCSNIGKWDMLQPYATGTSGRDGVVDTSDSDSDNEDSPTLHPSDELEGGLYGNYDQLLRTAIVGILIFWVFIALGVVVFDPSNDHLPS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0476 487 SUPERFAMILY CRAL/TRIO domain 249 399 IPR036865 -
Ssu8g0476 487 Pfam CRAL/TRIO domain 248 394 IPR001251 -
Ssu8g0476 487 Gene3D - 178 415 IPR036865 -
Ssu8g0476 487 SMART sec14_4 244 397 IPR001251 -
Ssu8g0476 487 PANTHER SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN 15 482 - -
Ssu8g0476 487 MobiDBLite consensus disorder prediction 418 443 - -
Ssu8g0476 487 CDD SEC14 240 394 IPR001251 -
Ssu8g0476 487 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 240 400 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0476 Ssu-Chr8 7486545 7490527 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0476 - - gmx:100786215 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0476 8 7486545 7490527 Ssu8g0476 8 7486545 7490527 ECH
Ssu8g0476 8 7486545 7490527 Ssu3g2614 3 79631779 79636592 PCT