Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2614 ATGCCTTCAGTTTACATGGGAGATAGGGTGGCTAGTTCTAACTCGAGCATGAGCTCTAATTCTAAAGAAAGCAGTGTTGTCACTGGGAAGAAAACATACAAAAAGCTTCTGGTTGCATCGCGCCCTAAAGGCTTTGCACTGAGAAATTATGAACACCTTGTGTCATTAACCCATGGTGACTTTGGAAGCAGTGCTGTGGGTCGTGTCACGTTTTTTTTACTCAAAGTTGCTGCATTAGAGACCGTGAGGAGGTTCTCCAAGAGTAAATGCCCGTGTGTATGGCGAGGCCTGCAGGGTCTACAAATCCTTGTCTATCCGCCATTCAAATGGATTCAGAAGTGGGCACCCTTCAGGGGTTTGGTCAAAAGCATGCAGGCACTTTCAAGGCCATTATTAGTCCTTTCGATTGCATCAGTCTTTACTGATCAACCGCAAAGTAGTGATGGAACTTCAGATTGTGTTACTGATTCCCATGATTCTGAAGTATCTGCATCTGCAGAATTATCTCCTGCGCAGGCTAATTTGAATACAAGTCCTTGTGAGATAGCTCCTGAAGTTTTAGAATATGAAAACTGGTTGACTCTACTCAATCAAGAGCTGGAAAATCAAGGGATTAGTTTGCCAGAAAGAATCAATGATGATGAGCTCCACAGATTTTACGCAGCTTCTAATAATGACTTTTCATGCTTCCTTACTTCAATCAAGAAGACAATATGCTGGCGGGAGAGTTACAGATTTCTTTCAGGAGAAGAGCTGGAAATGTGGTCAAATATGGTGTTCTGGCATGGATCTGATTTGTTGCACAGACCTTGCCTCATTGTAAGGCTTGGGATAGCTTGTAGCTCCTTGGCGTCTGAAGATAGAGATCAATTTGCTCAGGCAATTgTATCACAGGTGGAATATGGAGTCTTGCACTTGGTTGATGCAGACAACCCTCAAATTACAGTATTGGTGGACTGTGAAGGGTTATCTCCATTGAGAATTCCTATGAAAATGATGAGATCTTGTTCCTCCGTTCTGCAAGATCACTTTCCTAATCGTCTTGGTTGTTTGTTTGTCATCCGACTTCCAGCATTTGTTCGTGTTATTACCCAGACTTTTCTTCAGGTTTTAAAGCCAGCTACTAGGAAGAAGTTGAAATTAGGGGGAAAGATATATCAGAATGTACTTTATGACAATTTGCCGACACTACCATCATATCTTGGAGGCTGCTGCACTTGCATGAGATGTTCTAAAATTGGCAACTGGGATATGCGGCAACATAATGCAACTGGGACCAGCAGGATTGATAGGAGAGAGGATATCAGTGGCAATGAGGGTTTGCCATCACTGCACCCATCTAATGAATTAGATGGCCGCCAAATCATCAATTCTGACCAGATGTTGAGAACTGCTGTCATAAGTATTCTCCTATTTTGGGTTTTCATAGCTCTTGGTGCTGGAATTTACGATCCTGGTAGTCGTCATTTACCCCCATAA 1479 0.4266 MPSVYMGDRVASSNSSMSSNSKESSVVTGKKTYKKLLVASRPKGFALRNYEHLVSLTHGDFGSSAVGRVTFFLLKVAALETVRRFSKSKCPCVWRGLQGLQILVYPPFKWIQKWAPFRGLVKSMQALSRPLLVLSIASVFTDQPQSSDGTSDCVTDSHDSEVSASAELSPAQANLNTSPCEIAPEVLEYENWLTLLNQELENQGISLPERINDDELHRFYAASNNDFSCFLTSIKKTICWRESYRFLSGEELEMWSNMVFWHGSDLLHRPCLIVRLGIACSSLASEDRDQFAQAIVSQVEYGVLHLVDADNPQITVLVDCEGLSPLRIPMKMMRSCSSVLQDHFPNRLGCLFVIRLPAFVRVITQTFLQVLKPATRKKLKLGGKIYQNVLYDNLPTLPSYLGGCCTCMRCSKIGNWDMRQHNATGTSRIDRREDISGNEGLPSLHPSNELDGRQIINSDQMLRTAVISILLFWVFIALGAGIYDPGSRHLPP 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2614 492 Pfam CRAL/TRIO domain 257 403 IPR001251 -
Ssu3g2614 492 PANTHER SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN 15 488 - -
Ssu3g2614 492 MobiDBLite consensus disorder prediction 1 26 - -
Ssu3g2614 492 SUPERFAMILY CRAL/TRIO domain 254 408 IPR036865 -
Ssu3g2614 492 MobiDBLite consensus disorder prediction 425 446 - -
Ssu3g2614 492 SMART sec14_4 253 406 IPR001251 -
Ssu3g2614 492 MobiDBLite consensus disorder prediction 8 26 - -
Ssu3g2614 492 CDD SEC14 250 403 IPR001251 -
Ssu3g2614 492 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 261 409 IPR001251 -
Ssu3g2614 492 Gene3D - 188 431 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2614 Ssu-Chr3 79631779 79636592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2614 - - gmx:100814843 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0476 8 7486545 7490527 Ssu3g2614 3 79631779 79636592 PCT