Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0475 ATGACCATTGTTGCCATCGCTATCACTATCGTCGGTTGTGGCAGTGGTAATGACGAACCCcccaactctctctctctcttccctctTGTTGATGGCGTCCCAAGCAAGCCTCCTCCTTCAGAAGCAGCTCAAAGGTGCCCTACCCTGCACCCTACCTCACCCAatcccccctctctctctctatatcgTCTATTTGATTTCTTCGCGTGGATTTTCCGCGGCCTTCTGATTGATCTTCCCTTTGTTGCAGATCTTTGCAAGAACCCCGTCGATGGCTTTTCCGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGCGTTACTATAATTGGACCTCCCGACACTCTTTACGAGGGAGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCGCCATCAGTGAAATTTACCTCAGAGATATGGCATCCCAATGTGTATCCCGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAGAGTATAGTGTTAAGTATCATATCGATGCTTTCTAGTCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCGAAGGAgtggagagagaggagagatgAGTTCAAGAAAAAGTTCTGTGCTTTTTCTTCTCTACAGTACAGTGTGGTCATTTGTCTTGGAAAAACCAACTGTACTCTGAGTGCTTGGCCAGTGTTTGGTGACGTTGAGCTTGTCTATATCGGAATCCTGCTGGATGCAAATCATCGTACTTTGAACGATCTATGGATTATGCCAGCCAGCAGTTTCATACGCAGCCTTGCCAATGTTGATTAG 870 0.423 MTIVAIAITIVGCGSGNDEPPNSLSLFPLVDGVPSKPPPSEAAQRCPTLHPTSPNPPSLSLYRLFDFFAWIFRGLLIDLPFVADLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPPNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRERRDEFKKKFCAFSSLQYSVVICLGKTNCTLSAWPVFGDVELVYIGILLDANHRTLNDLWIMPASSFIRSLANVD 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0475 289 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 81 225 - -
Ssu8g0475 289 SUPERFAMILY UBC-like 83 226 IPR016135 -
Ssu8g0475 289 Pfam Ubiquitin-conjugating enzyme 84 224 IPR000608 -
Ssu8g0475 289 SMART ubc_7 82 233 - -
Ssu8g0475 289 Gene3D Ubiquitin Conjugating Enzyme 82 234 IPR016135 -
Ssu8g0475 289 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 147 162 IPR023313 -
Ssu8g0475 289 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 73 233 IPR000608 -
Ssu8g0475 289 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 81 225 - -
Ssu8g0475 289 CDD UBCc 83 227 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0475 Ssu-Chr8 7473038 7481804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0475 79 200 Miscellaneous Gene Families AT3G17000 32.824 2.33e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0475 K10575 - gmx:100500474 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0475 8 7473038 7481804 Ssu3g2616 3 79651149 79659087 PCT