Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2616 ATGGCATCCCAGGCTAGCCTTCTTCTTCAAAAGCAGCTCAAAGATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGACGAAAACAACATTTTTGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTCTACGAGGGAGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTGAAATTCACCTCAGAAATATGGCACCCCAAtgTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCAAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCTAAGGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAAGTTAGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGA 501 0.4331 MASQASLLLQKQLKDLCKNPVDGFSAGLVDENNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2616 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 166 - -
Ssu3g2616 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Ssu3g2616 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Ssu3g2616 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Ssu3g2616 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Ssu3g2616 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Ssu3g2616 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 166 - -
Ssu3g2616 166 CDD UBCc 17 159 IPR000608 -
Ssu3g2616 166 SMART ubc_7 7 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2616 Ssu-Chr3 79651149 79659087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2616 11 131 Miscellaneous Gene Families AT3G17000 32.308 7.03e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2616 K10575 - gmx:100305813 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2616 3 79651149 79659087 Ssu3g2616 3 79651149 79659087 ECH
Ssu8g0475 8 7473038 7481804 Ssu3g2616 3 79651149 79659087 PCT