Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0470 ATGGGTCAGAGCCTGAGTTGCAGAGGCAACCATGACCATGGCCTCTTCACCGCCGTGCAGCACGGTGACCTCCAAATTGTCACAACTCTCTTAGAGACCGACCCATCTCTCTTGCACCAAACCACTCTCTACGATCGCCACTCTGCTCTTCATATTGCCGCAGCCAATGGCCAGATCGAGATTCTCTCAACGCTTGTAGATGGATCTCTTAACCCAGATGTCTTAAATCGCCACAAGCAGACTCCGCTTATGTTGGCAGCAATGCACGGGAACATCGCGTGTGTGGAGAAGCTTCTTGAAGCCGGAGCTAATGTGTTAATGTTTGATACAATTCATGGTAGAACCTGCTTACACTATGCCGCATACTACGGCCATTCTTCTTGCCTTAAGGCTATTCTTTCCGCTGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGGTTTGCTCGGTTTGTGAATATTAGAGATGGAAAGGGTGCAACGCCATTGCACTTGGCGGCTCGTCAGAGACGGTCTGAATGTGTACATATTCTATTAGACAGTGGAGCTCTTGTTTGTGCTTCAACTGGTGGATATGGCTGTCCTGGGAGCACTCCGCTTCATCTAGCAGCTAGAGGGGGATCTCTGGATTGCATCCGTGAATTGTTGGCATGGGGTGCAGATCGTCTTCAACGCGATGCATCCGGGCGGATTCCATATATGGTTGCTCTGAAACACAAACATGGGGCCAGCGCATCATTGCTAAATCCTACATCTGCAGAACCTCTTGTCTGGCCGTCTCCATTGAAGTTCATCAGTGAGCTTAATCCTGAAGCCAAGGCTTTATTAGAACAGGCCTTGATGGATGCAAACAGAGAAAGGGAGAAAAACATATTGAAAGGGAGTGCTTACTCTTTTCCATCTCCATCACATTCTGATGGGCTAGCTGATGATATGTCTGAGGTTAGTGAGTCTGAATTATGCTGCATCTGCTTTGAGCAGGTATGCACAATTGAAGTTCAGAACTGTGGCCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGCCACAACAAGCCCAACCCTGCCACTGCCTGTCTTACTCCACCAGTTTGTCCATTTTGTCGAAGCACCATTACAAGACTCGTGGTTGTGAAGACAGAATGCCATGATGAAACTGATCAAGATAGTGTTGATATCAACTGTTCCAAGCTCAGCAAGTCAAGGAAACTCAGAAACTTGAATGATAGTGGTAGCAGCAGCTTCAAGGGATTGTCCAGTGTGAGTTCATTCGGGAAGTTGGGTGGCCGCAGCTCTGGAAGGATTGCTGCTGAGTGGCTCGATAAACAGTGA 1332 0.4842 MGQSLSCRGNHDHGLFTAVQHGDLQIVTTLLETDPSLLHQTTLYDRHSALHIAAANGQIEILSTLVDGSLNPDVLNRHKQTPLMLAAMHGNIACVEKLLEAGANVLMFDTIHGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGKGATPLHLAARQRRSECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYMVALKHKHGASASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANREREKNILKGSAYSFPSPSHSDGLADDMSEVSESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTITRLVVVKTECHDETDQDSVDINCSKLSKSRKLRNLNDSGSSSFKGLSSVSSFGKLGGRSSGRIAAEWLDKQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0470 443 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Ssu8g0470 443 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Ssu8g0470 443 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Ssu8g0470 443 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Ssu8g0470 443 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Ssu8g0470 443 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 443 - -
Ssu8g0470 443 Gene3D - 145 197 IPR036770 -
Ssu8g0470 443 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Ssu8g0470 443 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Ssu8g0470 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 389 IPR013083 -
Ssu8g0470 443 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Ssu8g0470 443 SMART ANK_2a 112 142 IPR002110 GO:0005515
Ssu8g0470 443 SMART ANK_2a 194 223 IPR002110 GO:0005515
Ssu8g0470 443 SMART ANK_2a 78 107 IPR002110 GO:0005515
Ssu8g0470 443 SMART ANK_2a 10 39 IPR002110 GO:0005515
Ssu8g0470 443 SMART ANK_2a 157 186 IPR002110 GO:0005515
Ssu8g0470 443 SMART ANK_2a 45 74 IPR002110 GO:0005515
Ssu8g0470 443 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Ssu8g0470 443 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Ssu8g0470 443 SUPERFAMILY RING/U-box 315 375 - -
Ssu8g0470 443 Pfam Ankyrin repeats (many copies) 195 234 IPR002110 GO:0005515
Ssu8g0470 443 Gene3D - 9 144 IPR036770 -
Ssu8g0470 443 Gene3D - 198 251 IPR036770 -
Ssu8g0470 443 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Ssu8g0470 443 SUPERFAMILY Ankyrin repeat 12 250 IPR036770 -
Ssu8g0470 443 PANTHER HOMEOBOX PROTEIN WARIAI 1 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0470 Ssu-Chr8 7394011 7396712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0470 12 211 Miscellaneous Gene Families AT5G02620 30.097 1.30e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0470 - - gmx:100786708 860.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0470 8 7394011 7396712 Ssu8g0470 8 7394011 7396712 ECH
Ssu8g0470 8 7394011 7396712 Ssu3g2627 3 79832272 79834763 PCT