Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2627 ATGGGTCAGGGGCTGAGTTGCAGGGGGAGCCATGAACATGGCCTATTCCGTGCTGTGCAGCATGGGGACCTAGAAACTGTTGCAGCCTTGTTGCACACACACCCTTCGCTTATGAATCACACCACTGTCTATGATCACCACTCTCCTCTTCATATTGCCGCTGCTAATGGCCAGATCCAGGTTTTATCGTGGCTTTTAAATGGATCTGTGAATCCAGATGTGCTGAATCGCCGAAAGCAGACACCGCTTATGTTGGCTGCAATGCACGGAAAGATCGCCTGTGTGGAAAAGCTCCTGGAAGCCGGTGCTAATgTATTAATGTTTGATGCGTGTTACGGAAGGACCTGCTTGCACTATGCCGCTTACTATGGCCATTCTTCTTGCCTTAAGGCAATTCTTTCTGCTGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGGTTTGCTAGGTTTGTGAATATTAGAGATGGTAGGGGTGCAACACCATTGCACTTGGCAGCCCGTCAAAAACGGCCTGAATGTGTACATATTCTATTGTACAGTGGAGCTCTTGTTTCTGCTTCAACTGGAAGATATGGCTGTCCTGGGAGCACTCCTCTTCATCTTGCAGCCAAAGGGGGATCTTTGGATTGCATCCGTGAACTGTTGGCATGGGGTGCAGATCGCCTTCAACGTGATGCATCTGGGCGGATACCATATTTAGTTGCTCTGAAACATAAACATGGCGCATGTGCAGCATTGCTAAATCTTTCATCTGCTGAGCCTCTTGTGTGGCCATCATCTTTGAAGGTGATCAGTGAGCTTAATCCAGACGCCAAAGAATTATTAGAGCGGGCCCTGATGGACGCAAACAGGGAAAGGGAGAAAAACATATTGAAAGGGAGTGATTACTCGCTTCCATCTCCATCACACACTGATGGGCTAGATGACAATATCTCTGAGGTTAGTGAGACGGAATTATGCTGCATCTGCTTTGAGCAAGTGTGTACAATTGAAGTCCAAGACTGTGGTCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGTCACAACAAGCCTAACCCTTCTACTTGTCGTATTATCCCTCCAGTTTGTCCATTCTGCCGAAGCACCATAGCCAGATTGGTGGTTGTCAAAAAAGAAAGCCCTGATGACATTGATCAAGATGGTGTTGATATCACTTGTTACAAGCCAAGCAAGTCTAGGAAATCCCGAAACATGAACGAGGGTGGTAGCAGCAGCTTCAAGGGATTATCAAGTGTGAACTCATTTGGAAAAATGGGTGGCCGCAGCTCTGGAAAAATTGCTGCTGAAAATGAGTGGGAAGATGATAAACAACAGTGA 1344 0.4717 MGQGLSCRGSHEHGLFRAVQHGDLETVAALLHTHPSLMNHTTVYDHHSPLHIAAANGQIQVLSWLLNGSVNPDVLNRRKQTPLMLAAMHGKIACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQKRPECVHILLYSGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYLVALKHKHGACAALLNLSSAEPLVWPSSLKVISELNPDAKELLERALMDANREREKNILKGSDYSLPSPSHTDGLDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPSTCRIIPPVCPFCRSTIARLVVVKKESPDDIDQDGVDITCYKPSKSRKSRNMNEGGSSSFKGLSSVNSFGKMGGRSSGKIAAENEWEDDKQQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2627 447 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Ssu3g2627 447 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Ssu3g2627 447 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 442 - -
Ssu3g2627 447 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Ssu3g2627 447 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Ssu3g2627 447 Pfam Ankyrin repeats (many copies) 194 235 IPR002110 GO:0005515
Ssu3g2627 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 385 IPR013083 -
Ssu3g2627 447 SUPERFAMILY RING/U-box 319 374 - -
Ssu3g2627 447 PANTHER HOMEOBOX PROTEIN WARIAI 1 442 - -
Ssu3g2627 447 SMART ANK_2a 45 74 IPR002110 GO:0005515
Ssu3g2627 447 SMART ANK_2a 112 142 IPR002110 GO:0005515
Ssu3g2627 447 SMART ANK_2a 157 186 IPR002110 GO:0005515
Ssu3g2627 447 SMART ANK_2a 10 39 IPR002110 GO:0005515
Ssu3g2627 447 SMART ANK_2a 194 223 IPR002110 GO:0005515
Ssu3g2627 447 SMART ANK_2a 78 107 IPR002110 GO:0005515
Ssu3g2627 447 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Ssu3g2627 447 Gene3D - 146 197 IPR036770 -
Ssu3g2627 447 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Ssu3g2627 447 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Ssu3g2627 447 MobiDBLite consensus disorder prediction 398 447 - -
Ssu3g2627 447 MobiDBLite consensus disorder prediction 405 427 - -
Ssu3g2627 447 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Ssu3g2627 447 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Ssu3g2627 447 Pfam Ankyrin repeats (3 copies) 112 184 IPR002110 GO:0005515
Ssu3g2627 447 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Ssu3g2627 447 Gene3D - 9 145 IPR036770 -
Ssu3g2627 447 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Ssu3g2627 447 Gene3D - 198 251 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2627 Ssu-Chr3 79832272 79834763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2627 12 330 Miscellaneous Gene Families AT5G60070 27.003 2.68e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2627 - - gmx:100800611 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2627 3 79832272 79834763 Ssu3g2627 3 79832272 79834763 ECH
Ssu8g0470 8 7394011 7396712 Ssu3g2627 3 79832272 79834763 PCT