Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0445 ATGGAAAACGGGGATCAGCTCCAGGAAATTTCAAAGGCGAGTTACGATTGTCTTTTATTTGATCTTGATGATACCCTTTACCCTTTGAGTTCTGGATTGGCTGAGCGcatgaaaaagaatattaacGAATACATGCTTCAAAAGCTTGGGATACCGGAGGCTAAGGTTCCTGAATTGTGCTTTTCATTATATAAGACTTACGGGACAACCATGGCCGGTCTCAAGGCTATTGGCTATGACTTTGACTATGATGACTTTCATGGCTTTGTTCATGGGAGACTACCGTATGATATACTGAAACCTGACCCTGTTCTCCGGGGAATTTTGCTAAGCTTGCCTGTTCGAAAAATTGTTTTTACAAACTCAGACCAGGCTCACGCAAGTAGAGTGCTTCACAGGCTTGGACTAGAGGATTGCTTTGAAAGGATTATAAGCTTTGAGACCCTGAATTCCTCCAATAAAATGAATACTCCAGACAATGAGGATGGCAGTGAATATAAACCAAGTTCCACGgggatttttgatttttatgagtACATTCGCAGGCCTGATTCTGATATCGTGCTTCCAAGGACCCCAGTTGTATGCAAACCCTTTAAAGATGCCTTTGTAAAGGTTTTCAATATGGCAGATATTGACCCTCAAAGAACATTATTCTTTGATGACAGTCTCCGCAATTTACAAACGGGCAAATCCTTGGGCCTCCACACAGTCTTGGTGGGTACATCCGTTCGAACTACGGGAGTGGATCATGCCTTAGAGAGCATCCATAATATGAAGGAGGCATTTCCAGAACTGTGGGAAGCCAATGAGAAGCCTGAAAGTATCGAGTGTTCTAGAAAGGTTTCAATTGAAACATCAGTAATAGCTTAA 873 0.4089 MENGDQLQEISKASYDCLLFDLDDTLYPLSSGLAERMKKNINEYMLQKLGIPEAKVPELCFSLYKTYGTTMAGLKAIGYDFDYDDFHGFVHGRLPYDILKPDPVLRGILLSLPVRKIVFTNSDQAHASRVLHRLGLEDCFERIISFETLNSSNKMNTPDNEDGSEYKPSSTGIFDFYEYIRRPDSDIVLPRTPVVCKPFKDAFVKVFNMADIDPQRTLFFDDSLRNLQTGKSLGLHTVLVGTSVRTTGVDHALESIHNMKEAFPELWEANEKPESIECSRKVSIETSVIA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0445 290 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 192 240 IPR006439 -
Ssu8g0445 290 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 1 290 - -
Ssu8g0445 290 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 11 270 - -
Ssu8g0445 290 SFLD C1.5.3: 5'-Nucleotidase Like 11 270 IPR010237 -
Ssu8g0445 290 CDD HAD_5NT 17 242 IPR010237 -
Ssu8g0445 290 Gene3D - 107 273 IPR023214 -
Ssu8g0445 290 TIGRFAM Pyr-5-nucltdase: pyrimidine 5'-nucleotidase 16 240 IPR010237 -
Ssu8g0445 290 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 1 290 - -
Ssu8g0445 290 SUPERFAMILY HAD-like 15 261 IPR036412 -
Ssu8g0445 290 Gene3D - 6 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0445 Ssu-Chr8 7085539 7087482 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0445 K07025 - gmx:100790444 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0445 8 7085539 7087482 Ssu8g0445 8 7085539 7087482 ECH
Ssu8g0445 8 7085539 7087482 Ssu3g2649 3 80110947 80117288 PCT