Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0433 ATGCCTATGCCTGAACGCACGTACAGACATATTGATACTTCAAGAAGTCCTACCATCGCTAGCGTGGAACAATTTCTTCGAGGTACAGGAGGAGATTCTGCCAGGATGTCACCAACCTACTCTTCCACCTCCTCTAATTCCCCCTCCTCCCCTTACTTTGAGAGGTTGAAACACCATGACCCAGAAGAAGACCATGGCCTCTATCAGAAGAAATCAGTTCTCACCAAAGTGAAGGAGAAGGCCAGGAAATTCCGCAACAGCCTCAGCAAGAGAAGACAGGAGGATGAGAATGTCACACCCTCTTGGGGTGTTAGCTTAGAagatgaagaggaagaagaagacgCTGAATACCTTGGAGCTCCAATGTATGAATCGGAGCTGGCACCTGAGGGATACAAAGAAAATGCAAGGCAACATCCAAGAGCAAATCCAGTAATCTCTGAGAAGCATGTTTTGAAGAACACTGTCAAATTAGGAGTACGACAAGATCAAGAAAAGCCACGTGGTCCTGTCAATGTCAAgtccacaacaacaacaactcaacctgCTACAATAACTCCAACTCCTCCAAACATGACATCTGAAACTATAGCTCAGAAACTGACACCTGCCTATACTAGAGGATCAAATGCAGCCCATTCTATATCCTCCAAAATTCAAGCTGCTGTTTCCACAGCTCCTCCTGCAGCCAACAACATGTCCTCCCAAACTTCTTCAACTGCACCACTTACTTCATCAGTTCCATCTCCAAAGCAAAATTCACCATCCTCATCTGCTCCACTGAATAAGAATACAAGCCAAAAGGGTGCTTCAGTCAAAGATTATTTGATGAACAAGTCTGAGCCAAGGGATGATGCCAAAACTGTGTCTCAACCTCAGGTGACATCAGAAGCAACGAGTCCAATGAGAACTTCTAGTAATGCAGGTGTGATGGACAAGGTGATCGGAGCTGTAAATTCTTTGCTCAGCAATGAGGAACCATCACAACAATATGGAGTCAAAACTCCTACTACACGCACTTCGTCGCAAACTCAACAAGAGGCGAAACAGCAACGTAcgtgttattatttattgatggAAGACAAAGCGAACTTGATAAAGAGGAGGGGAGGATGCCCTACACCTACAAGGTTACAGAAGCATGCACCGGCCTCTCTTGACATTGATAAGGTTCTCAGTGACCGTCCCTCTAACCCTTTTTCCGACGCTTCAAGGGCAATACCGCTGTTATCTCCGCTCATCCTTTCTCCACAGCCAATGTATGCAGACATTACTATACAAGTTCGAACATCAGAGAATGAGAACAATGGGAGTGGTAGTGCATCACGTGCTTCCTCCACCGGCTGGCAACATCCAGCTATGGCTTCATTTCCAGAGCCATCGTCTTTGTGTAGTTTCTTCCAAAAGCAATGCGTTTTTTTGAACCATGCCCAGTGA 1437 0.4363 MPMPERTYRHIDTSRSPTIASVEQFLRGTGGDSARMSPTYSSTSSNSPSSPYFERLKHHDPEEDHGLYQKKSVLTKVKEKARKFRNSLSKRRQEDENVTPSWGVSLEDEEEEEDAEYLGAPMYESELAPEGYKENARQHPRANPVISEKHVLKNTVKLGVRQDQEKPRGPVNVKSTTTTTQPATITPTPPNMTSETIAQKLTPAYTRGSNAAHSISSKIQAAVSTAPPAANNMSSQTSSTAPLTSSVPSPKQNSPSSSAPLNKNTSQKGASVKDYLMNKSEPRDDAKTVSQPQVTSEATSPMRTSSNAGVMDKVIGAVNSLLSNEEPSQQYGVKTPTTRTSSQTQQEAKQQRTCYYLLMEDKANLIKRRGGCPTPTRLQKHAPASLDIDKVLSDRPSNPFSDASRAIPLLSPLILSPQPMYADITIQVRTSENENNGSGSASRASSTGWQHPAMASFPEPSSLCSFFQKQCVFLNHAQ 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0433 478 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 261 348 IPR037491 GO:0009737
Ssu8g0433 478 MobiDBLite consensus disorder prediction 1 69 - -
Ssu8g0433 478 MobiDBLite consensus disorder prediction 34 52 - -
Ssu8g0433 478 MobiDBLite consensus disorder prediction 323 347 - -
Ssu8g0433 478 MobiDBLite consensus disorder prediction 432 452 - -
Ssu8g0433 478 MobiDBLite consensus disorder prediction 169 273 - -
Ssu8g0433 478 MobiDBLite consensus disorder prediction 130 149 - -
Ssu8g0433 478 MobiDBLite consensus disorder prediction 53 69 - -
Ssu8g0433 478 PANTHER EUKARYOTIC RNA POLYMERASE II HEPTAPEPTIDE REPEAT 261 348 - -
Ssu8g0433 478 PANTHER EUKARYOTIC RNA POLYMERASE II HEPTAPEPTIDE REPEAT 15 247 - -
Ssu8g0433 478 MobiDBLite consensus disorder prediction 85 116 - -
Ssu8g0433 478 MobiDBLite consensus disorder prediction 287 307 - -
Ssu8g0433 478 MobiDBLite consensus disorder prediction 158 310 - -
Ssu8g0433 478 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 15 247 IPR037491 GO:0009737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0433 Ssu-Chr8 6949325 6954210 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0433 - - gmx:102664483 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0433 8 6949325 6954210 Ssu3g2660 3 80288160 80290470 PCT