Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2660 ATGGCTCAACTCGAACGCCCTCAGAGACAGGTTGATACTTCAAAAACTCCCACTACCATCCATACTATGGAACAACTCCTCCGAGGAGATGTCTCCAAGTCTAAGCAGTCACCAACCTTGTCCTCCTCCCCCTCCGCCTCCTCTTCTTCCCCATCCTCCCCTTTCTTCCAAAGGCTGAGGCACCATGACCCAGAAGAAGAGCATGGCCAGAATCAGAAGAAATCAGTTCTCACCAAAGTGAAGGAGAAGGCCAAGAAATTACGCCACAGCCTCAGCAAGAGGAAACACGAGGACGGGAGCACCACTAGTCCATCATCTGTCACTGGCTTAGAAGGTGATGGAGTAGAAGAAGACGCTGAGTACCTCGGAGCTCCCATGTACGAATCAGAGAAGGCGCCTGCAGGGTACAAAGCAAATGCAAGGCAGCATCCAAGTCCAAGAGGAAATCCAGTAACCCCTGAGAAACATGTTATATCAAGCAGTGACAAACACGTGGTGGAACAAGATCAAGGAAAGACACTAAGCCGTTCCATATCTAAGAAAACAACAACACAACCTGCAACAATAGCCACCACTCCAAATGCTACCACTAATACTAACGctaatattaatactaatactCTTTCTGGTTCAAACAAGCCAATATCTGAAACCGTAGCACAGAAACTGACACCAGTTCATGTTGGAGCACCAGGTGCAGCCCACTCTCTAACCTCCAAAATGCAAGGACTTACTGTATCCAATTCCAAACCCAGAGAGCATCATGATCACACTTCATCTTCAACAGTTTCACCTAAATTAATTCGCAACAGTTCTTTGTCCTATGCTGCTCCACGTACTCCCCCTGCAAAGGTACCCTCCCAAGCTTCTTCAAGCACTCCGCGAACTGCATCAGCTCCGGTGACTCCAGCACCTGCATCTGCTCCTCCACGGAGTGGGAAGAACACAAGCCCCACCGCGCAAATATGGGATAAGGGTGTTTCGATGAAAGAGTACTTGATGAACAAATTGGAGCCAGGGGAAGATGAGAAGGCGCTGTCTCAGGTGATATCCGAAGCAATGAGTCCTAGGAGAACTCCTGGCGATGCAGGCGTGATGGAGAAGGTGAGAGAAGCTGTAACTTCTTTGCTCCGAACTGAGGAACCAACAAAATATGCAGACACAAATACTACTGCTGCTGCTGCTACTAGTACTACTACTCGCGCTTCATCTCAAATGTCAGCATCCAACAATGCTTCTCGCGCTTCATCTCAAATCCCAGTATCTTCCAACCCTCAGCAAGACTATGCAGTGGCTCAGGAAGAAAACCATGGTCGAATTCTTCAGGCAAATTGA 1335 0.4787 MAQLERPQRQVDTSKTPTTIHTMEQLLRGDVSKSKQSPTLSSSPSASSSSPSSPFFQRLRHHDPEEEHGQNQKKSVLTKVKEKAKKLRHSLSKRKHEDGSTTSPSSVTGLEGDGVEEDAEYLGAPMYESEKAPAGYKANARQHPSPRGNPVTPEKHVISSSDKHVVEQDQGKTLSRSISKKTTTQPATIATTPNATTNTNANINTNTLSGSNKPISETVAQKLTPVHVGAPGAAHSLTSKMQGLTVSNSKPREHHDHTSSSTVSPKLIRNSSLSYAAPRTPPAKVPSQASSSTPRTASAPVTPAPASAPPRSGKNTSPTAQIWDKGVSMKEYLMNKLEPGEDEKALSQVISEAMSPRRTPGDAGVMEKVREAVTSLLRTEEPTKYADTNTTAAAATSTTTRASSQMSASNNASRASSQIPVSSNPQQDYAVAQEENHGRILQAN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2660 444 MobiDBLite consensus disorder prediction 1 56 - -
Ssu3g2660 444 MobiDBLite consensus disorder prediction 261 277 - -
Ssu3g2660 444 MobiDBLite consensus disorder prediction 382 430 - -
Ssu3g2660 444 MobiDBLite consensus disorder prediction 1 324 - -
Ssu3g2660 444 MobiDBLite consensus disorder prediction 309 323 - -
Ssu3g2660 444 PANTHER LOW-TEMPERATURE-INDUCED 65 KDA PROTEIN-RELATED 32 444 IPR037491 GO:0009737
Ssu3g2660 444 MobiDBLite consensus disorder prediction 171 219 - -
Ssu3g2660 444 MobiDBLite consensus disorder prediction 58 78 - -
Ssu3g2660 444 PANTHER LOW-TEMPERATURE-INDUCED PROTEIN 32 444 - -
Ssu3g2660 444 MobiDBLite consensus disorder prediction 284 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2660 Ssu-Chr3 80288160 80290470 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2660 - - gmx:102667939 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0433 8 6949325 6954210 Ssu3g2660 3 80288160 80290470 PCT