Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0423 ATGGCTGAGAAAGAGACACTGTATTCAATAGGTGATTGGAGGAGAATACCAATTTGCACTTTCTTTAAGGATGCCAGACTAGTTTTTAAAGCAGACAGTCTTGGTCGGGAAATTTTGTCAATTGCATTGCCTGCAGCAATGGCTTTGACAGCTGATCCTATTGCTTCACTAGTTGACACAGCATTTATTGGCCAAATAGGTCCAGTAGAGCTTGCTGCTGTAGGAGTTTCAATAGCTCTCTTCAATCAAGTATCAAGGATTGCAATATTCCCACTTGTCAGTGTCACAACCTCTTTTGTGGCTGAGGAAGATACCCTTAGTGGAGCAAGCCCTCAGATAGAGGAGAGTAGATGCTTGGAAGCAGGTCCACCTATGGATGCTGAAACCAAAGACTTATTACCTAAGAAAGTTACAGGTGGAAATGTTCACAATTCAGATTTTGTTGGTGAAAGTTTTAATATAGTGAAGGAGGAACATAAGAGAAGGCATATCCCTTCAGCTTCATCAGCATTATTTATCGGTGGCATCCTTGGTCTCATCCAGGCAATATTTCTTATATCTGCAGCAAAACCTTTATTGAACTTCATGGGAATAACTTCTGACTCTCCTATGCTACACCCTGCACAGCAGTATCTGACATTGAGGTCCCTTGGTGCTCCTGCCGTTCTTCTCTCATTAGCGATGCAGGGAGTCTTCCGAGGATTCAAAGACACTAAAACTCCTTTATATGCCACTGTGGCGGGAGATGCAACCAACATAGCACTAGATCTTTTATTCATGTTCGTATTCCGTTTGGGTGTCAGTGGTGCAGCCATTGCCCACGTTATATCTCAGTACCTAATTTCAGCTATACTCCTGTGGAGGCTGTTGGAACAAGTTGACCTTATACCTCCAAGCATAAAGCATATGCAATTTGACCGATTTCTTAAAAATGGTTTTCTACTATTAATGAGAGTCATCGCTGTAACATTCTGTGTGACTCTGGCTGCATCATTAGCTGCACGGCAAGGATCAACATCCATGGCTGCATTTCAAGTATGTCTGCAGGTTTGGTTGGCAGTGTCTCTTCTTGCTGATGGTCTGGCCGTTGCTGGGCAGGCGATTCTCGCAGGTGCATTTGCTAATAAGGACTTCAACAGGGCCACAGCAACTGCATCCCGAGTTCTGCAGGTGCTTTAG 1179 0.4385 MAEKETLYSIGDWRRIPICTFFKDARLVFKADSLGREILSIALPAAMALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTLSGASPQIEESRCLEAGPPMDAETKDLLPKKVTGGNVHNSDFVGESFNIVKEEHKRRHIPSASSALFIGGILGLIQAIFLISAAKPLLNFMGITSDSPMLHPAQQYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVAGDATNIALDLLFMFVFRLGVSGAAIAHVISQYLISAILLWRLLEQVDLIPPSIKHMQFDRFLKNGFLLLMRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQVWLAVSLLADGLAVAGQAILAGAFANKDFNRATATASRVLQVL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0423 392 Pfam MatE 166 256 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu8g0423 392 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 8 391 IPR044644 -
Ssu8g0423 392 PANTHER PROTEIN DETOXIFICATION 8 391 - -
Ssu8g0423 392 TIGRFAM matE: MATE efflux family protein 44 391 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0423 Ssu-Chr8 6850866 6854209 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0423 K03327 - gmx:100170750 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0423 8 6850866 6854209 Ssu8g0423 8 6850866 6854209 ECH
Ssu8g0423 8 6850866 6854209 Ssu3g2682 3 80561868 80565907 ECH
Ssu8g0423 8 6850866 6854209 Ssu3g2682 3 80561868 80565907 PCT