Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2682 ATGGTTGGCGAAGGTAGTCTTTATTCATCAGGAGATGGGAGgagaattcaaattttcaatgtcTTTACAGATGCTAGACTAGTTTTCAAATCTGACAAACTTGGTCGAGAAATATTATCAATTGCATTGCCTTCAGCAATGGCTTTGACAGCTGACCCTATTGCTTCGCTGGTTGACACAGTATTCATTGGTCAAATAGGTCCAGTGGAGCTTGCAGCTGTAGGGGTGTCCATTGCACTCTTCAATCAAATATCGAGGATAGCAATATTCCCACTTGTCAGTGTCACTACCTCTTTTGTGGCTGAGGAAGATACCCTTACTGGAGCCTGTCCTCAAGTAGAGAAGAGTGAATGCTTGGAAGCAGGTCCAATTATGGATGCTGAAATAAAAGAACTAATACCACATAATAAAGACACAGGTGGAAATGTTCAAAAATCAGATTTGGTTGGTATTGACTTTAATATAGTTAAGGTTGAACATAGGAGAAGGCATATCCCTTCTGCTTCATCAGCATTAGTTATTGGTGGCATTATTGGCCTCATCCAGGCAATGTTCCTCATATCTGCTGCAAAACCTTTATTGAACTTCATGGGAGTAACCTCAGAGTCTCCTATGCTAAACCATGCACAGAACTATCTGACATTGAGGTCCCTTGGTGCTCCCGCCGTTCTTCTCTCATTAGCAATGCAGGGCATCTTCCGAGGATTTAAAGACACTAAAACACCTTTATATGCAACATTGGCAGGAGATGTGACCAACATAGCACTGGATCCTTTATTCATGTTTGTTTTCCGCTTGGGGGTCAGTGGTGCAGCTATTGCTCATGTTATATCGCAGTACCTAATTTCTGTTATACTGCTGTGGAGCTTGGTGAAAAAAGTTGACCTTATACCTCCAAGCATCAAGCATCTACAATTTGATCGATTTCTTAAAAATGgctttctattattaataagaGTAATTGCTGTAACATTCTGTGTGACACTGGCGGCATCATTAGCTGCATGCCAGGGATCAACATCCATGGCTGCGTTTCAAGTCTGCCTGCAGATTTGGCTAGCAGTGTCCCTTCTTGCTGATGGTCTGGCTATTGCTGGGCAGGCAATTCTTGCAAGTGCATTCGCTAACAAGGACTATGAAAAAGCCAAAGCAACCGCATCCCGAGTATTACAGCTGGGTTTGGTTCTGGGGTTGGCTCTAGCATTCATTCTTGGAACAGGACTGCATTTTGGAGCTAACATTTTTACAAAAGATGTTAATGTCCTCCACCTCGTTAGAATTGGGATCCcgTTCGTAGCAGCTACTCAACCCCTCAACGCTTTGGCATTTGTATTTGATGGAATAAACTTTGGGGCATCTGATTTTGCATATTCAGCCATTTCTTTGGTTGTGGTGGCAATTGTCAGCATCATTTGTCTACTCATTTTATCATCTGCTGGCGGTTTCATAGGAATTTGGATTGCTTTGACCATCTATATGGGTCTTAGAGCAATTGCTGGCTTTTTAAGGATTGGAACTGGATCAGGACCCTGGGAGCTGCTTAGGAGCTGA 1551 0.4184 MVGEGSLYSSGDGRRIQIFNVFTDARLVFKSDKLGREILSIALPSAMALTADPIASLVDTVFIGQIGPVELAAVGVSIALFNQISRIAIFPLVSVTTSFVAEEDTLTGACPQVEKSECLEAGPIMDAEIKELIPHNKDTGGNVQKSDLVGIDFNIVKVEHRRRHIPSASSALVIGGIIGLIQAMFLISAAKPLLNFMGVTSESPMLNHAQNYLTLRSLGAPAVLLSLAMQGIFRGFKDTKTPLYATLAGDVTNIALDPLFMFVFRLGVSGAAIAHVISQYLISVILLWSLVKKVDLIPPSIKHLQFDRFLKNGFLLLIRVIAVTFCVTLAASLAACQGSTSMAAFQVCLQIWLAVSLLADGLAIAGQAILASAFANKDYEKAKATASRVLQLGLVLGLALAFILGTGLHFGANIFTKDVNVLHLVRIGIPFVAATQPLNALAFVFDGINFGASDFAYSAISLVVVAIVSIICLLILSSAGGFIGIWIALTIYMGLRAIAGFLRIGTGSGPWELLRS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2682 516 CDD MATE_DinF_like 34 506 IPR044644 -
Ssu3g2682 516 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 17 515 IPR044644 -
Ssu3g2682 516 TIGRFAM matE: MATE efflux family protein 44 486 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu3g2682 516 Pfam MatE 168 259 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu3g2682 516 Pfam MatE 319 471 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu3g2682 516 PANTHER PROTEIN DETOXIFICATION 17 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2682 Ssu-Chr3 80561868 80565907 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2682 K03327 - gmx:100780165 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2682 3 80561868 80565907 Ssu3g2682 3 80561868 80565907 ECH
Ssu8g0423 8 6850866 6854209 Ssu3g2682 3 80561868 80565907 ECH
Ssu8g0423 8 6850866 6854209 Ssu3g2682 3 80561868 80565907 PCT