Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0390 ATGCATAAGCCAGCAGAGCCACTAGAGTTTGCTCTCAAGGAGACCTCACCCAACATAGGGGCAGGTGCGGTCATGAGGGACAAGCTCTCCTGCACCTATGATCTGGTTGAACAGATGCAGTACCTCTATGTTCGAGTGGTGAAAGCCAAGGATTTACCCGGGAAGGATGTTACTGGTGGTGTGGATCCCTATGTTGAAGTGAAGCTTGGAAACTACAAGGGCCTTAGCAAGCACTTTGAGAAAAAGTCTAATCCTCAGTGGAATCAGGTTTTTGCCTTCTCCAAAGAAAGGATTCAAGCTTCTGTTCTGGAGGTGGTGGTCAAAGATAAGGATGTTGCTGTGGATGACTTGGTGGGGAGAGTGATGTTTGATCTTAATGAAATCCCAAAACGTGTGCCCCCAGATAGCCCTTTGGCTCCACAGTGGTACAGGCTGGAAGACAGGAGAGGTGACAAAGCCAAGGGAGAGCTAATGTTGGCAGTTTGGATGGGAACTCAAGCAGATGAGGCATTTCCTGATGCATGGCATTCTGATGCAGCAACTGTTGGTCCTGAAGCGGTTGCAAACATAAGATCAAAGGTTTACCTTTCACCTAAGCTTTGGTATGTCAGGGTCAATGTTATTGAGGCTCAAGACTTGATACCAAGTGACAAAACCCGGTATCCTGAAGTTTTTGTGAGGGGTAATCTGGGGAATCAGTTTTTAAGAACTAGAATATCTCAAAGTAAAACCATAAATCCTATGTGGAATGAGGACTTGATGTTTGTTGCTGCTGAGCCATTTGAGGAGCCCTTGGTTCTGAGTGCAGAAGACAGGGTTGGACCAAACAAGGATGAAATCCTGGGAAGGTGTGTGATTCCTTTACACAATGTGCAAAGGAGATTGGACCACAAGCCTGTGAACACAAAGTGGTTTAATCTTGAAAAACATGTGGTTGTTGAAGGGGAACAGAAGAAAGAGACCAAGTTCTCAAGTAGGATACAGTTGAGGGTTTGCTTGGAAGGTGGCTACCATGTGTTGGATGAATCAACTCACTACAGTAGTGATCTTAGACCAACTGCAAAGCAGCTGTGGAAGCCCAGCATTGGAATTCTGGAAGTGGGGATTATAAGTGCACAAGGGCTGATGCCAATGAAAACAAGAGATGGTAGAGGAACCACAGATGCCTATTGTGTAGCAAAATATGGGCAGAAGTGGATTCGTACTAGGACAATTGTAGAAAGTCTTGCTCCAAGGTGGAATGAACAATACATTTGGGAGGTTTTTGATCCATGTACTGTTATCACAATAGGGGTTTTTGATAATGGTCATTTACATGGGGGAGACAAATCAGGTGGATCAAAGGATTCAAGAATAGGGAAGGTGAGAATTAGGCTATCCACTCTTGAAGCTGACAGGGTGTACACACACTCTTATCCTCTTTTGGTACTGCATAATTCAGGTGTGAAGAAAATGGGAGAAGTGCAATTGGCTGTAAGGTTCACAAGCTTATCTTTGATAAACATGCTGGGTATGTATTCACAGCCATTGTTGCCAAAGATGCACTATATCCATCCTCTATCTGTGATTCAGCTAGACAGCCTTAGGCATCAGGCTATACACATTGTGTCAATGAGGTTGAGCAGGGCTGAGCCACCCCTGAGGAAAGAGGTGGTGGAATACATGCTAGATGTGGATTCACACATGTGGTGTATGAGAAGGAGCAAAGCTAATTTCTTCAGAATAACCAAAGTCCTAGGTGGGTTGATAGCCATTGGAAGGTGGTTTGATCAGATATGCAATTGGAAAAACCCTCTCACATCCATACTCATTCATATCCTTTTCATAATATTGGTTCTTTATCCAGAGCTAATACTTCCCACAACTTTCCTTTACCTTTCTCTGATTGGAATTTGGAACTTCCGATGGAGGCCAAGACACCCTCCTCACATGGACACACGACTATCACATGCTGATGCTGCTCATCCTGATGAACTAGATGAAGAGTTTGATACATTCCCAACTTCTCGATCATCAGATATTGTTAGGATGAGGTATGATCGTTTAAGAAGCATTGCAGGGAAGGTCCAAACTCTTGTAGGTGACCTGGCCACTCAAGGAGAAAGGTTCCATAATCTGCTAAGCTGGAGAGACACAAGGGCTACCACTCTCTTTGTGACATTCTGTTTCATTGCTGCAGTAGTTCTCTATGTTACTCCATTCCAAGTTGTGTCCCTTTTCATTGGCTTCTATGTCCTAAGGCACCCCAGATTCCGCCAGAAAATTCCTTCAGTCCCATTTAACTACTTCAAGAGGTTGCCTGCTAGAGTGGACAGCATATTGTAA 2325 0.4426 MHKPAEPLEFALKETSPNIGAGAVMRDKLSCTYDLVEQMQYLYVRVVKAKDLPGKDVTGGVDPYVEVKLGNYKGLSKHFEKKSNPQWNQVFAFSKERIQASVLEVVVKDKDVAVDDLVGRVMFDLNEIPKRVPPDSPLAPQWYRLEDRRGDKAKGELMLAVWMGTQADEAFPDAWHSDAATVGPEAVANIRSKVYLSPKLWYVRVNVIEAQDLIPSDKTRYPEVFVRGNLGNQFLRTRISQSKTINPMWNEDLMFVAAEPFEEPLVLSAEDRVGPNKDEILGRCVIPLHNVQRRLDHKPVNTKWFNLEKHVVVEGEQKKETKFSSRIQLRVCLEGGYHVLDESTHYSSDLRPTAKQLWKPSIGILEVGIISAQGLMPMKTRDGRGTTDAYCVAKYGQKWIRTRTIVESLAPRWNEQYIWEVFDPCTVITIGVFDNGHLHGGDKSGGSKDSRIGKVRIRLSTLEADRVYTHSYPLLVLHNSGVKKMGEVQLAVRFTSLSLINMLGMYSQPLLPKMHYIHPLSVIQLDSLRHQAIHIVSMRLSRAEPPLRKEVVEYMLDVDSHMWCMRRSKANFFRITKVLGGLIAIGRWFDQICNWKNPLTSILIHILFIILVLYPELILPTTFLYLSLIGIWNFRWRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRSSDIVRMRYDRLRSIAGKVQTLVGDLATQGERFHNLLSWRDTRATTLFVTFCFIAAVVLYVTPFQVVSLFIGFYVLRHPRFRQKIPSVPFNYFKRLPARVDSIL 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0390 774 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Ssu8g0390 774 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 6 774 - -
Ssu8g0390 774 SMART C2_3c 364 471 IPR000008 -
Ssu8g0390 774 SMART C2_3c 41 137 IPR000008 -
Ssu8g0390 774 SMART C2_3c 202 300 IPR000008 -
Ssu8g0390 774 CDD C2B_MCTP_PRT_plant 41 165 - -
Ssu8g0390 774 Gene3D C2 domain 361 498 IPR035892 -
Ssu8g0390 774 Pfam C2 domain 201 307 IPR000008 -
Ssu8g0390 774 Pfam C2 domain 41 134 IPR000008 -
Ssu8g0390 774 Pfam C2 domain 363 474 IPR000008 -
Ssu8g0390 774 ProSiteProfiles C2 domain profile. 346 472 IPR000008 -
Ssu8g0390 774 Gene3D C2 domain 187 332 IPR035892 -
Ssu8g0390 774 Gene3D C2 domain 25 163 IPR035892 -
Ssu8g0390 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 354 IPR035892 -
Ssu8g0390 774 Pfam Plant phosphoribosyltransferase C-terminal 619 774 IPR013583 -
Ssu8g0390 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 41 178 IPR035892 -
Ssu8g0390 774 CDD C2C_MCTP_PRT_plant 202 352 - -
Ssu8g0390 774 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE-LIKE PROTEIN 6 774 - -
Ssu8g0390 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 363 496 IPR035892 -
Ssu8g0390 774 ProSiteProfiles C2 domain profile. 23 143 IPR000008 -
Ssu8g0390 774 CDD C2D_MCTP_PRT_plant 364 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0390 Ssu-Chr8 6279841 6282165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0390 1 774 Lipid Metabolism Gene Families AT3G57880 80.645 0.0 1340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0390 - - gmx:100809753 1470.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0390 8 6279841 6282165 Ssu8g0390 8 6279841 6282165 ECH
Ssu8g0390 8 6279841 6282165 Ssu3g2716 3 81190305 81192635 PCT