Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2716 ATGCAGAAGGCACCACTTGCACATTCACATGAGTTTGCCTTGAAGGAGACCTCTCCCAACATAGGGGCAGGGGCAGTCACAGGGGACAAACTATCCTGCACCTATGACCTGGTTGAGCAGATGCAGTACCTCTATGTTCGCGTGGTCAAAGCCAAGGATTTACCTGCAAAAGATGTCACGGGTAGTCTTGATCCCTATGTTGAAGTGAAGCTTGGAAACTACAAGGGTCTCACCAAGCATTTTGAGAAGAAGTCCAATCCTGAGTGGAATCAGGTCTTTGCCTTCTCCAAAGACCGGATTCAGGCCTCAGTGTTGGAGGTTATTGTCAAAGATAAGGATGTGATTGCAGATGATTTTGTGGGGAGGGTGTGGTTTGATCTGAATGAGATCCCAAAACGTGTGCCCCCGGATAGTCCATTGGCTTCACAGTGGTATAGACTTGAAGATCGCAAGGGTGAAAAGGCCAAAGGAGAGTTAATGCTGGCAGTTTGGATGGGGACTCAAGCAGATGAGGCATTTCCTGATTCTTGGCATTCTGATGCAGCAATGGTCGGCTCTGAAGCAGTTGCAAACATAAGGTCAAAGGTTTACCTCTCTCCCAAGCTTTGGTATGTGAGGGTTAATGTGATTGAAGCACAGGACTTGGTTCCAATTGACAAGAGCCGGTATCCTGAAGTTTTTGTGAAGGTTAATCTAGGGAATCAGTTTTCAAGGACTAGAGTGTCTCAAAGTAAAACCATAAATCCTATGTGGAATGAGGATTTGATGTTGGTTGCTGCGGAGCCGTTTGAGGAGCCCTTGATTCTGACCGTGGAAGACAGGCTTGGACCAAACAAAGATGAGATCCTGGGAAGGTGTGTGATCCCTTTGCAGATTGTGCAACGGAGGCTGGACCATAAGCCTGTGAACACCAGGTGGTATAATCTTGAGAAGCATGTGATTGTTGAAGGGGAGAAGAAGGAGATCAAATTTGCAAGCAGGATACATTTGAGGGTTTGTTTGGATGGTGGGTTTCATGTGTTGGATGAGTCAACACATTACAGTAGTGATCTTAGGCCAACTGCCAAGCAATTATGGAAGCCTAGCATTGGAATTCTAGAAGTGGGGATTATAAGTGCACAAGGGCTTATGCCAATGAAGACAAGAGGTGGTAAAGGAACCACAGATGCTTATTGTGTGGCAAAATATGGCCAGAAGTGGATCCGCACTAGGACAATTGTAGATAGCTTTACTCCAAAGTGGAATGAGCAGTACACTTGGGAAGTGTTTGATCCATGCACTGTTATTTCCATAGGGGTCTTTGATAATGGTCGTATACAAGGAGGAGGAGACACAGCTGGTGGATCAAAGGATTCTAGGATTGGGAAGGTGAGAATTAGGCTATCCACACTTGAAGCTGGTAGAGTTTACACGCACTCGTACCCTCTTTTAGCACTTCATACTTCAGGTGTGAAGAAAACAGGAGAAGTGCAATTGGCTGTGAGGTTCACAAGCTCATCTTTCATCAATATGTTGTATATGTATTCCCAGCCATTGTTGCCAAAGATGCACTACATCCATCCTCTATCTGTGATTCAGCTAGACAGTCTGAGGCATCAGGCCATGCAGATTGTATCAATGAGGTTGAGCCGGGCTGAGCCACCCCTAAGGAAAGAGGTTGTAGAATACATGCTTGATGTGGATTCACACATGTGGAGCATGAGAAGGAGCAAGGCTAATTTCTTCCGAATAATGAAAGTTCTAGGTGGTTTGATAGCCTTTGGGAGGTGGTTTGATCAGATATGCAATTGGAAAAACCCCATCACCACCGTACTAATTCATGTCCTTTTCATAATATTGGTTCTTTACCCTGAGCTAATACTTCCCACAATCTTCTTGTACCTGTTCTTGATTGGAATTTGGAACTTCAGATGGAGGCCTAGACACCCTCCACACATGGACACTAGACTGTCTCATGCTGATGCTGTTCATCCTGATGAATTAGATGAAGAGTTTGATTCCTTCCCAACTTCGCGGCCGTCGGATATTGTTAGGATGAGGTATGATCGTTTAAGAAGCATTGCAGGGAGAGTCCAAAGTGTTGTAGGTGACTTAGCTACCCAAGGAGAAAGGTTCCAAAGTCTGCTAAGCTGGAGAGATCCAAGGGCTACCACACTCTTTGTGACATTCTGTTTCATTGCTGCTATAGTTCTCTATGTCACTCCCTTTCAGGTTGTGTCCCTTCTCATTGGCTTCTATATGCTAAGGCATCCAAGATTCCGCCAGAAACTCCCATCAGTCTCACTCAATTTCTTTAGGAGGTTGCCTGCTAGATCAGACAGCATGTTGTAA 2331 0.4522 MQKAPLAHSHEFALKETSPNIGAGAVTGDKLSCTYDLVEQMQYLYVRVVKAKDLPAKDVTGSLDPYVEVKLGNYKGLTKHFEKKSNPEWNQVFAFSKDRIQASVLEVIVKDKDVIADDFVGRVWFDLNEIPKRVPPDSPLASQWYRLEDRKGEKAKGELMLAVWMGTQADEAFPDSWHSDAAMVGSEAVANIRSKVYLSPKLWYVRVNVIEAQDLVPIDKSRYPEVFVKVNLGNQFSRTRVSQSKTINPMWNEDLMLVAAEPFEEPLILTVEDRLGPNKDEILGRCVIPLQIVQRRLDHKPVNTRWYNLEKHVIVEGEKKEIKFASRIHLRVCLDGGFHVLDESTHYSSDLRPTAKQLWKPSIGILEVGIISAQGLMPMKTRGGKGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYTWEVFDPCTVISIGVFDNGRIQGGGDTAGGSKDSRIGKVRIRLSTLEAGRVYTHSYPLLALHTSGVKKTGEVQLAVRFTSSSFINMLYMYSQPLLPKMHYIHPLSVIQLDSLRHQAMQIVSMRLSRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMKVLGGLIAFGRWFDQICNWKNPITTVLIHVLFIILVLYPELILPTIFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAVHPDELDEEFDSFPTSRPSDIVRMRYDRLRSIAGRVQSVVGDLATQGERFQSLLSWRDPRATTLFVTFCFIAAIVLYVTPFQVVSLLIGFYMLRHPRFRQKLPSVSLNFFRRLPARSDSML 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2716 776 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE-LIKE PROTEIN 8 776 - -
Ssu3g2716 776 CDD C2D_MCTP_PRT_plant 365 493 - -
Ssu3g2716 776 CDD C2C_MCTP_PRT_plant 204 353 - -
Ssu3g2716 776 Pfam Plant phosphoribosyltransferase C-terminal 621 776 IPR013583 -
Ssu3g2716 776 Gene3D C2 domain 188 334 IPR035892 -
Ssu3g2716 776 ProSiteProfiles C2 domain profile. 183 307 IPR000008 -
Ssu3g2716 776 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 364 502 IPR035892 -
Ssu3g2716 776 Pfam C2 domain 43 145 IPR000008 -
Ssu3g2716 776 Pfam C2 domain 203 309 IPR000008 -
Ssu3g2716 776 Pfam C2 domain 364 476 IPR000008 -
Ssu3g2716 776 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 8 776 - -
Ssu3g2716 776 ProSiteProfiles C2 domain profile. 347 474 IPR000008 -
Ssu3g2716 776 SMART C2_3c 365 473 IPR000008 -
Ssu3g2716 776 SMART C2_3c 204 302 IPR000008 -
Ssu3g2716 776 SMART C2_3c 43 139 IPR000008 -
Ssu3g2716 776 Gene3D C2 domain 362 500 IPR035892 -
Ssu3g2716 776 CDD C2B_MCTP_PRT_plant 43 167 - -
Ssu3g2716 776 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 43 181 IPR035892 -
Ssu3g2716 776 Gene3D C2 domain 42 165 IPR035892 -
Ssu3g2716 776 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 203 355 IPR035892 -
Ssu3g2716 776 ProSiteProfiles C2 domain profile. 25 145 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2716 Ssu-Chr3 81190305 81192635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2716 1 776 Lipid Metabolism Gene Families AT3G57880 81.596 0.0 1356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2716 - - gmx:100788273 1484.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0390 8 6279841 6282165 Ssu3g2716 3 81190305 81192635 PCT