Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0382 ATGATAATAATTAGGAAAGAAGATTTGCTGTCCTGGCATCTTCCCTTTTATCAAGCCAAACTAAGGAGCATGTTACTCGTGGTTggattttatacaagaaaagCCAGTAACTTGAAGAAAATTGCAAATATTTGTCTCATGAAGTATGATGGAGACATACCTAGCTCAATTGAGGAACTACTCTTGCTGCCAGGAGTAGGTCCTAAGATTGCTCATCTGGTTATGATTGTTGGATGGAACAACGTTCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAATCGTCTTGGATGGGTTTCCAGATCAGGCTCAAAACAGAAAACTTTGACACCGGAAGAAACAAGACAAGCGCTGCAACGGTGGCTTCCTAAGGAAGAATGGGTTCCAATAAATCCTCTTTTGGTAGGATTTGGACGAACAATTTGTACTCCTCTACGGCCTCACTGTGGAGAGTGCAGTtttttatcgaATCCATGGTATGCTATTCCTTTTTGTTCGAATTTTCAATGCAGGTACTACTGTGACTACTGCAATACCTATTTGACACACGATTCCCCATCAGTTAGAAAGCAGCAAAACGCAGGTTACAAACATAAGGCAAATGTGAGGTCTTACTACCAGCAATTTGAAGAACAACAAACCCAAAGTTTAATTTATCAAAGGATCAAAGAACGTCTTGGGCAAACTGCAGCCTTTCAGCAGGTTGGTGTGGCTTATAATCATCTAATGGTTAAGAGGCCTACCCTTCCTCATGTATTGCCACCGCCAAGATTGCCTATGCCTAGAAATGCACAAATACCTGGAAGCCAACCACTAATACCAGGGATCAGACCTGTCTTGCCCAGACCAGTTCCTGGATATGTTTCTGCACCTACCATGCCTCCAATGGTACCCCTACCTGGTGCTCCCCAGGTACCAGGTCAACTAAATACCATACCAAGGCCCCCTTCATTAGCTCCCCCTCCAATAATTCCAAGAAACACTGCTGCACCAGCTTCCAATGGTGCTCCCTCTATGGTATCATTAACAATGTATCAAGCCAAtctaccatcaccatcacctAGAAGTTATGATAATTACAATGCCAATGATCAAGCACCTGAGGGCAATCACTGA 1122 0.4171 MIIIRKEDLLSWHLPFYQAKLRSMLLVVGFYTRKASNLKKIANICLMKYDGDIPSSIEELLLLPGVGPKIAHLVMIVGWNNVQGICVDTHVHRICNRLGWVSRSGSKQKTLTPEETRQALQRWLPKEEWVPINPLLVGFGRTICTPLRPHCGECSFLSNPWYAIPFCSNFQCRYYCDYCNTYLTHDSPSVRKQQNAGYKHKANVRSYYQQFEEQQTQSLIYQRIKERLGQTAAFQQVGVAYNHLMVKRPTLPHVLPPPRLPMPRNAQIPGSQPLIPGIRPVLPRPVPGYVSAPTMPPMVPLPGAPQVPGQLNTIPRPPSLAPPPIIPRNTAAPASNGAPSMVSLTMYQANLPSPSPRSYDNYNANDQAPEGNH 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0382 373 Pfam HhH-GPD superfamily base excision DNA repair protein 18 124 IPR003265 GO:0006284
Ssu8g0382 373 Gene3D Hypothetical protein; domain 2 13 77 - -
Ssu8g0382 373 Gene3D Classic Zinc Finger 172 228 - -
Ssu8g0382 373 MobiDBLite consensus disorder prediction 312 329 - -
Ssu8g0382 373 Pfam Helix-hairpin-helix motif 48 75 IPR000445 GO:0003677
Ssu8g0382 373 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 28 155 - -
Ssu8g0382 373 SMART ZnF_U1_5 171 207 IPR003604 GO:0003676|GO:0008270
Ssu8g0382 373 MobiDBLite consensus disorder prediction 333 373 - -
Ssu8g0382 373 Gene3D - 78 163 IPR023170 -
Ssu8g0382 373 SUPERFAMILY DNA-glycosylase 20 158 IPR011257 GO:0003824|GO:0006281
Ssu8g0382 373 SMART endo3end 3 142 IPR003265 GO:0006284
Ssu8g0382 373 ProSitePatterns Endonuclease III family signature. 51 80 IPR004036 -
Ssu8g0382 373 Pfam U1 zinc finger 173 208 IPR013085 GO:0008270
Ssu8g0382 373 Hamap U1 small nuclear ribonucleoprotein C [SNRPC]. 172 340 IPR017340 GO:0000387|GO:0000398|GO:0005685
Ssu8g0382 373 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 28 155 - -
Ssu8g0382 373 ProSiteProfiles Zinc finger matrin-type profile. 174 206 IPR000690 GO:0003676|GO:0005634|GO:0008270
Ssu8g0382 373 MobiDBLite consensus disorder prediction 312 373 - -
Ssu8g0382 373 SUPERFAMILY beta-beta-alpha zinc fingers 173 222 IPR036236 -
Ssu8g0382 373 CDD ENDO3c 19 140 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0382 Ssu-Chr8 6024677 6035507 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0382 K10773 K11095 gmx:100795821 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0382 8 6024677 6035507 Ssu3g2731 3 81493367 81497965 PCT