Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2731 ATGATGTCTGAGACAACTCGACGCTTTTGCAAAGCCACTCCCTCCAATACCAACACACCCACTTCCATTGTTGAAGCTTCCCATTCCCAAGTTCGTGTCTTTGCGAGGAGAAGTAAGAGACCCAGAAAAATGGCCGTCAAACTTGAAGAAAAGGATCATCTTCCCTCAACCCAGGACAACAAGGTTCCGGTTACGCGGAAGTTTGGCCTACCGGAAATTGAAGAATTTGCGTACAGTGGAGCAAATGAATCGACTCAGTGTAGGAAATCTGAAATGGACTCAGATGTGACTCCAGCAGGAAGTGAAGTTGCTACTCCAAGACCTGGTGGTGAATCACCTGCCCACTGGGAAAAGGTGCTTGAGGGGATTCGCAAAATGAGGTGTTCTGCAGATGCACCAGTAGATACTATGGGATGTGAGAAAGCTGGTGATACACTACCTCCTAAGGAAAGAAGATTTGCTGTCCTCGTATCTTCTCTTTTATCAAGCCAAACGAAGGATCCTGTTACTCATGGAGCAATCCAACGCCTTCTTCAAAATGGTCTGCTTACTGCTGAAGCAATCAATGATGCTGATGAAGAAACCATCAAAAAGTTGATTTACCCTGTTGGGTTTTATACAAGAAAAGCCactaacttgaaaaaaattgcaaatatttGTCTCATGAAGTATGATGGAGAGATACCTAGCTCAATTGAGCAACTACTCTTACTTCCGGGCATCGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGGATGGAACAATGTCCAGGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAACCGGCTTGGTTGGGTCTCAAGATTGGGCACAAAACAGGTACCTTTAAGTTTGGCAGCTTCACATTTTATGTATGGGGCATTATTACCTAACTTATTTGTTCTCGCTACATTGCGGCGCTGGTGCAGATGTGTCAGTTGGAATGAGCtttttttagggaaaaaattattcaaattattttctacacatttgcatacacacacatatatattggtATATATGAAGGCATATTCTATCGTTGTTTACAATCAATATTCATATGTTAAATTACCAGATCAGAAACTATCACATTTATAG 1107 0.3993 MMSETTRRFCKATPSNTNTPTSIVEASHSQVRVFARRSKRPRKMAVKLEEKDHLPSTQDNKVPVTRKFGLPEIEEFAYSGANESTQCRKSEMDSDVTPAGSEVATPRPGGESPAHWEKVLEGIRKMRCSADAPVDTMGCEKAGDTLPPKERRFAVLVSSLLSSQTKDPVTHGAIQRLLQNGLLTAEAINDADEETIKKLIYPVGFYTRKATNLKKIANICLMKYDGEIPSSIEQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRLGTKQVPLSLAASHFMYGALLPNLFVLATLRRWCRCVSWNELFLGKKLFKLFSTHLHTHTYILVYMKAYSIVVYNQYSYVKLPDQKLSHL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2731 368 MobiDBLite consensus disorder prediction 82 114 - -
Ssu3g2731 368 ProSitePatterns Endonuclease III family signature. 226 255 IPR004036 -
Ssu3g2731 368 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 64 283 - -
Ssu3g2731 368 SMART endo3end 161 298 IPR003265 GO:0006284
Ssu3g2731 368 Pfam HhH-GPD superfamily base excision DNA repair protein 157 279 IPR003265 GO:0006284
Ssu3g2731 368 Gene3D - 251 301 IPR023170 -
Ssu3g2731 368 SUPERFAMILY DNA-glycosylase 124 280 IPR011257 GO:0003824|GO:0006281
Ssu3g2731 368 Pfam Helix-hairpin-helix motif 223 251 IPR000445 GO:0003677
Ssu3g2731 368 MobiDBLite consensus disorder prediction 1 22 - -
Ssu3g2731 368 CDD ENDO3c 153 282 IPR003265 GO:0006284
Ssu3g2731 368 Gene3D Hypothetical protein; domain 2 139 250 - -
Ssu3g2731 368 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 64 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2731 Ssu-Chr3 81493367 81497965 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2731 K10773 - gmx:100818398 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0382 8 6024677 6035507 Ssu3g2731 3 81493367 81497965 PCT