Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0375 ATGCCTACTATTTTACTTAGGATTTTCCTTCTTTACAACCTCGTACGTCCGTTTCTCCTGTGTCTGGTCCCGAAGAAGGTGCGAGCCTTCCTCCCCCGTTCTTGGTTCCAAACCACCACTGCGCCAGCGCCTTCAACTTCGAGGGCCCTCAGGAGAATAATGTCAATGGACCCCCACGAGCTCAAGCGCGTTTTCCAAATGTTCGATCGCAACGGGGACGGGCGAATCACGAAGAAGGAGCTGAACGACTCGCTGGAGAACCTCGGCATCTTCATCCCCGACAAGGAGCTCGCGCAGATGATCGAGAAGATTGACGTCAACGGAGACGGGTGCGTGGACATCGACGAGTTCGGGGAGCTGTACCAGAACATCATGGACGAGCGCGACGAAGAGGAGGACATGAGGGAGGCCTTCAACGTCTTCGACCAAAACGGGGACGGCTTCATCACCGTCGAAGAGTTGAGGACCGTCCTCTCCTCGCTGGGCTTGAAGCAGGGAAGAACGGTCGAGGATTGCAAGAAGATGATCATGAAGGTCGACGTCGATGGAGATGGCATGGTGGACTACAACGAGTTCAGGCAAATGATGAAAGGGGGTGGCTTCAGTGCTCTCACTTAA 618 0.5469 MPTILLRIFLLYNLVRPFLLCLVPKKVRAFLPRSWFQTTTAPAPSTSRALRRIMSMDPHELKRVFQMFDRNGDGRITKKELNDSLENLGIFIPDKELAQMIEKIDVNGDGCVDIDEFGELYQNIMDERDEEEDMREAFNVFDQNGDGFITVEELRTVLSSLGLKQGRTVEDCKKMIMKVDVDGDGMVDYNEFRQMMKGGGFSALT 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0375 205 ProSiteProfiles EF-hand calcium-binding domain profile. 56 91 IPR002048 GO:0005509
Ssu8g0375 205 CDD EFh 137 197 IPR002048 GO:0005509
Ssu8g0375 205 ProSiteProfiles EF-hand calcium-binding domain profile. 167 202 IPR002048 GO:0005509
Ssu8g0375 205 CDD EFh 60 117 IPR002048 GO:0005509
Ssu8g0375 205 Pfam EF-hand domain pair 131 197 IPR002048 GO:0005509
Ssu8g0375 205 Pfam EF-hand domain pair 60 122 IPR002048 GO:0005509
Ssu8g0375 205 PANTHER CALMODULIN-LIKE PROTEIN 4 6 203 - -
Ssu8g0375 205 ProSitePatterns EF-hand calcium-binding domain. 142 154 IPR018247 -
Ssu8g0375 205 SMART efh_1 133 161 IPR002048 GO:0005509
Ssu8g0375 205 SMART efh_1 96 124 IPR002048 GO:0005509
Ssu8g0375 205 SMART efh_1 60 88 IPR002048 GO:0005509
Ssu8g0375 205 SMART efh_1 171 199 IPR002048 GO:0005509
Ssu8g0375 205 ProSiteProfiles EF-hand calcium-binding domain profile. 92 127 IPR002048 GO:0005509
Ssu8g0375 205 ProSitePatterns EF-hand calcium-binding domain. 105 117 IPR018247 -
Ssu8g0375 205 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 203 - -
Ssu8g0375 205 SUPERFAMILY EF-hand 60 199 IPR011992 -
Ssu8g0375 205 ProSitePatterns EF-hand calcium-binding domain. 69 81 IPR018247 -
Ssu8g0375 205 Gene3D - 124 199 - -
Ssu8g0375 205 ProSiteProfiles EF-hand calcium-binding domain profile. 129 164 IPR002048 GO:0005509
Ssu8g0375 205 ProSitePatterns EF-hand calcium-binding domain. 180 192 IPR018247 -
Ssu8g0375 205 Gene3D - 45 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0375 Ssu-Chr8 5973244 5973861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0375 5 203 EF-hand Containing Proteins AT2G43290 63.850 1.43e-94 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0375 K13448 - gmx:100527487 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0375 8 5973244 5973861 Ssu3g2740 3 81648179 81648634 PCT