Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2740 atggaGCCGACGGAGCTGAAGCGCGTTTTCCAAATGTTCGACCGGAACGGGGACGGGCGAATCACGTTGAAGGAGCTGAAGGAGTCGTTGGAGAAGCTGGGCATCTTGATTCCGGACAAGGAGCTGGCGCAGATGATCGAGCGGATCGACGTGAACGGCGACGAGTGCGTGGACATGGAGGAGTTCGGCGAGCTATACCAGTCCATCATGGAGGAGCGCGACGACGAGGAGGAGGACATGCGGGAGGCCTTCAACGTCTTCGACCAGAACCGCGACGGCTTCATCACCGTCGACGAGCTCCGAACGGTGCTGGCCTCGCTCGGACTCAAGCAAGGGAGGACCCTCGAGGAGTGCAAGAAGATGATCACCAAGGTCGACGTTGATGGGGATGGGATGGTTAATTACAACGAGTTCAGGCAAATGATGAAAGGGGGAGGCTTCACTGCTCTTAGTTAA 456 0.5702 MEPTELKRVFQMFDRNGDGRITLKELKESLEKLGILIPDKELAQMIERIDVNGDECVDMEEFGELYQSIMEERDDEEEDMREAFNVFDQNRDGFITVDELRTVLASLGLKQGRTLEECKKMITKVDVDGDGMVNYNEFRQMMKGGGFTALS 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2740 151 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Ssu3g2740 151 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 150 - -
Ssu3g2740 151 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Ssu3g2740 151 Coils Coil 59 79 - -
Ssu3g2740 151 PANTHER CALMODULIN-LIKE PROTEIN 3 1 150 - -
Ssu3g2740 151 ProSitePatterns EF-hand calcium-binding domain. 88 100 IPR018247 -
Ssu3g2740 151 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Ssu3g2740 151 CDD EFh 83 143 IPR002048 GO:0005509
Ssu3g2740 151 ProSiteProfiles EF-hand calcium-binding domain profile. 113 148 IPR002048 GO:0005509
Ssu3g2740 151 SMART efh_1 79 107 IPR002048 GO:0005509
Ssu3g2740 151 SMART efh_1 41 69 IPR002048 GO:0005509
Ssu3g2740 151 SMART efh_1 117 145 IPR002048 GO:0005509
Ssu3g2740 151 SMART efh_1 5 33 IPR002048 GO:0005509
Ssu3g2740 151 Pfam EF-hand domain pair 77 143 IPR002048 GO:0005509
Ssu3g2740 151 Pfam EF-hand domain pair 5 67 IPR002048 GO:0005509
Ssu3g2740 151 Gene3D - 2 70 - -
Ssu3g2740 151 Gene3D - 71 145 - -
Ssu3g2740 151 SUPERFAMILY EF-hand 4 144 IPR011992 -
Ssu3g2740 151 CDD EFh 5 62 IPR002048 GO:0005509
Ssu3g2740 151 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Ssu3g2740 151 ProSitePatterns EF-hand calcium-binding domain. 126 138 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2740 Ssu-Chr3 81648179 81648634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2740 1 150 EF-hand Containing Proteins AT1G05990 78.667 2.13e-79 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2740 K13448 - gmx:100796922 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0375 8 5973244 5973861 Ssu3g2740 3 81648179 81648634 PCT