Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0356 ATGGCGAATCTGGTTCCCGGGGTGCTTCTGAAGCTTCTGCAGCACATGAACACGGATGTGAAGGTTGGTGGGGAGCACAGGTCGTCGCTGTTGCAAGTTGTGAGCATTGTTCCGGCACTTGCAGGGGGTGAACTGTTCCCAAATCAAGGTTTCTATCTCAAAGTCTCTGATTCCTCTCACGCCACTTACGTGTCTCTCCCTGATGAGCATGATGATCTCATTCTGAGTGATAAGATTCAGTTGGGTCAGTTTGTGTTCGTTGATCGGTTGGAGGGTGCTTCTCCTGTCCCTATTCTTCGCGGGGTTAGGCCTGTTCCTGGTAGACACCCTTGTGTTGGAACCCCTGAGGATATTGTTGCAACTCACTCCCTTGCCTTCCTTGACAATGATAAGGACAAGAATGGGGTTTGTTCTGGTGGGGCTGACATGGATAGATCGAAGTCTCCGAGGAAGGTGTttggtggtggtgttggtgAGAAGGAGAGGGTGAGATcaagtggtggtggtggtggtgggagtGGTAAGGAGGAAGTGCAATTGAACAAGACAAGTGGTGTTTTGGGGAAGACTAAATCTCAGTCTCAGCCAATTAAGCCTGCACTCAAGATTGAGGTGAAGAAGGAAACTTTGGCTAGATTGAGGTCGACCAATTCGCGGTCCATTCCTTTGTCACCAAGTAGTTGCTACTCGTTGCCGAGCTCTTTTGAGAAATTTGCCAATGGGGTCAGGCAGCAGCAGGCAAAGGCTGGTGCTAAGGTGGGAGTGGTGGAGACTGGAAAGGCTGCTCTTGGGGCTAGTAGTCCGGGTGGGAAGAAAAGTGCATTGGGAAATCCGATTAGAAATTTGGTGCAGGGAATTGAGCTGGGGACTAAGGCTCTAAGGAAGAGCTGGGAAGGGAGTATGGAGGTCAAGACTAGAGAGTCTTCCAAAACCAGGGTTGCTACCAAGTTTGATCCTAAGCCTGAAGTTCGTAATGCAGTAAGCACTCCTAGGAGGAGAAGCATTTCAGGCGAAAAGTTGCCATCTAAAGAGGAGGGCAGGATCCAAGCACCAACAAAGCTCTCTAAGGAACAACATAAAAGTCAAACGTCTACAAAGAAGGCTAATGCTAATGGAACTATGGAGGAACCAGAAAAGTCGAGTAAGCAAAGAACTTCCATTGGAAAGAAATCAGCAGAAGTTTCTAACAGCGGACTCCCTGGAAACTTGGTCAAAGTTTCTCTGAGTAATAGAAAAGTGACAGATGCAAGTGTTCAATGGGCTTCACTTCCATCATCTATTTCAAAGCTTGGAAGGGAAGTAATGAAGCACAGAGATGCGGCACAGATGGCAGCTAATGAGGCAATGCAAGAGGCTGCTGCTGCAGAGAGTTTGCTGCAATGTCTAAGAACATATTCAGAGCTAAGTAATTCTGCTAAGGAACATAACCCACAGCCAGCAGTAGAGCAGTTTTTAACTCTTCATGCTAGCCTGAATAGTACCCGGACAATTGCTGAATCCTTATCAAAACCCATTCCAGATGGTTCATCTGCAGATTATGACAAGAGCACAGTGGAAGAAGCGCTAAAAGTAAAATCAGATAGACAAAAACAAGCGGCTTCCTGGGTCCAGGCAGCCTTGGCCACCAATCTGCCGTCCTTTGCTGTTTTTACAAGAGAACCTCAATCATCCAGGCCTATGgcttcaaacaattctcaaaatcAAAAGACTGTCATGGGAAGTCAACCCATGTTAGTCCTACGCAATTCCAGTGAAGATGCTTCATCAAAAGTTCAGGCAAAAACTCGTCTGACAGCTAATTCCAAGCATGCCTCACAAGGAACTCTTCGCAAACCAGGTGATGGGTTATTAAATGGGCAGAAGCAGCTAGTCCAACCGCCCCCAGAATGGGTTAGAGGAAATGGCCTCAATGAGGTAGTTAATCTGGCTGAAATGTTGCAGTTACAGTCCCGAGACTGGTTTTTGGGATTTGTTGAGAGGTTCTTGGACAGTGATGGGGACAGTACCCTGTCAGATAACGACCAAATAGCAGGTATGCTCACTCAACTAAAGAGTGTTAACGATTGGTTAGATGAGATAGGATCGAGCAAGGATGAGGGAGAATCATGCAAGATATCAGCAGAGACAATTGACCGGTTGAGGAAGAAGATATATGAATATCTTCTTACACATGTTGAATCTGCTGCTGCTGCACTCAATGGTGGATCACAATCGTCACCTCAGATCCAAACAACACATATTAAAGCCAAAAGATGA 2256 0.4517 MANLVPGVLLKLLQHMNTDVKVGGEHRSSLLQVVSIVPALAGGELFPNQGFYLKVSDSSHATYVSLPDEHDDLILSDKIQLGQFVFVDRLEGASPVPILRGVRPVPGRHPCVGTPEDIVATHSLAFLDNDKDKNGVCSGGADMDRSKSPRKVFGGGVGEKERVRSSGGGGGGSGKEEVQLNKTSGVLGKTKSQSQPIKPALKIEVKKETLARLRSTNSRSIPLSPSSCYSLPSSFEKFANGVRQQQAKAGAKVGVVETGKAALGASSPGGKKSALGNPIRNLVQGIELGTKALRKSWEGSMEVKTRESSKTRVATKFDPKPEVRNAVSTPRRRSISGEKLPSKEEGRIQAPTKLSKEQHKSQTSTKKANANGTMEEPEKSSKQRTSIGKKSAEVSNSGLPGNLVKVSLSNRKVTDASVQWASLPSSISKLGREVMKHRDAAQMAANEAMQEAAAAESLLQCLRTYSELSNSAKEHNPQPAVEQFLTLHASLNSTRTIAESLSKPIPDGSSADYDKSTVEEALKVKSDRQKQAASWVQAALATNLPSFAVFTREPQSSRPMASNNSQNQKTVMGSQPMLVLRNSSEDASSKVQAKTRLTANSKHASQGTLRKPGDGLLNGQKQLVQPPPEWVRGNGLNEVVNLAEMLQLQSRDWFLGFVERFLDSDGDSTLSDNDQIAGMLTQLKSVNDWLDEIGSSKDEGESCKISAETIDRLRKKIYEYLLTHVESAAAALNGGSQSSPQIQTTHIKAKR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0356 751 MobiDBLite consensus disorder prediction 297 319 - -
Ssu8g0356 751 MobiDBLite consensus disorder prediction 139 178 - -
Ssu8g0356 751 Coils Coil 438 458 - -
Ssu8g0356 751 MobiDBLite consensus disorder prediction 387 402 - -
Ssu8g0356 751 MobiDBLite consensus disorder prediction 336 363 - -
Ssu8g0356 751 MobiDBLite consensus disorder prediction 583 607 - -
Ssu8g0356 751 MobiDBLite consensus disorder prediction 144 158 - -
Ssu8g0356 751 MobiDBLite consensus disorder prediction 296 402 - -
Ssu8g0356 751 PANTHER EXPRESSED PROTEIN 1 750 IPR010341 -
Ssu8g0356 751 Pfam Plant protein of unknown function (DUF936) 4 732 IPR010341 -
Ssu8g0356 751 MobiDBLite consensus disorder prediction 583 619 - -
Ssu8g0356 751 PANTHER DUF936 FAMILY PROTEIN 1 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0356 Ssu-Chr8 5787416 5792368 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0356 - - gmx:100817734 1241.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0356 8 5787416 5792368 Ssu8g0356 8 5787416 5792368 ECH
Ssu8g0356 8 5787416 5792368 Ssu3g2755 3 81850662 81854897 PCT