Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0345 ATGAAGAACGACCACAACAACCGGGAACACAACAAAGACACTACCGTAGGAATCCTAGATTCCCGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAGCATTCCTGGTAAAATATTATTGAGCCAGAGGGTTGACCCTCCAGATAACTCAAACTTATACTCACCAACTTATATAAGGAGCGCCTCATACACTGAAGCTGGCACAAGTGACCACACATCTGAGACAGTAGAGGAGGAAGTTCATAGTACAAGTAAACCATTTGGTATTCCCAAAGAGAATAAGTCAAAAATATCAGCATCCAATGTAGAGAGCCCATCTGAAGAAGTCCGGAAATCTTCCGTGGGTGCTAGAGCTACAGATTCTGCAAGAGTTGTGAAGTTCACTAAGGTGCTTTCTGGGACGATGGTTATATtagATAAATTGCGTGAATTAGCTTGGAGTGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTTTGAGAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCAGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGATTGTCCAAGAACTGTACCTGATGTTCCATTCTTTCAACAACAGCAAGTTCAGAAATCACTGGAGCGTATTCTTTACACATGGGCCATTCGGCATCCTGCAAGTGGATATGTTCAAGGAATAAATGATCTTGTTACGCCATTTTTAGTTGCTTTCCTATCAGAATACTTACAAGGGGGCATAGATAATTGGTCAATGTCTGATTTATCTTCAGATGAAATCTCTAATGTAGAAGCCGACTGCTATTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAAGACCATTATACATTTGCTCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGACGATCCTGTTTCAAGCCATATGGAGCAACAAGGACTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGTGAGATACCCTTCCATCTCGTCACACGTCTTTGGGACACGTATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATTTGCCAGTTTTCTCCTAACGTGGTCAGACAAGCTCCAGAAGCTTGAATTCCAAGAGTTGGTAATGTTCCttcaacaccttccaaccaaGAACTGGACTCATCAGGAGCTCGAGATGGTACTTTCTCGTGCATTTATGTGGCACAGCATGTTCAACAACTCTCCGAGCCATTTAGCTAACTGA 1353 0.4191 MKNDHNNREHNKDTTVGILDSRFNQTLRNVQGLLKGRSIPGKILLSQRVDPPDNSNLYSPTYIRSASYTEAGTSDHTSETVEEEVHSTSKPFGIPKENKSKISASNVESPSEEVRKSSVGARATDSARVVKFTKVLSGTMVILDKLRELAWSGVPDYMRPTVWRLLLGYAPPNSDRREGVLRRKRLEYLDCVSQYYDIPDTERSDDEINMLRQIAVDCPRTVPDVPFFQQQQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVAFLSEYLQGGIDNWSMSDLSSDEISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSSHMEQQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLQKLEFQELVMFLQHLPTKNWTHQELEMVLSRAFMWHSMFNNSPSHLAN 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0345 450 MobiDBLite consensus disorder prediction 99 113 - -
Ssu8g0345 450 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 189 314 - -
Ssu8g0345 450 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 132 340 IPR035969 -
Ssu8g0345 450 MobiDBLite consensus disorder prediction 88 119 - -
Ssu8g0345 450 ProSiteProfiles TBC/rab GAP domain profile. 153 380 IPR000195 -
Ssu8g0345 450 Gene3D - 315 450 - -
Ssu8g0345 450 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 447 - -
Ssu8g0345 450 Pfam Rab-GTPase-TBC domain 157 401 IPR000195 -
Ssu8g0345 450 Gene3D - 131 181 - -
Ssu8g0345 450 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 316 438 IPR035969 -
Ssu8g0345 450 SMART tbc_4 150 406 IPR000195 -
Ssu8g0345 450 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 2 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0345 Ssu-Chr8 5647719 5654248 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0345 K20360 - gmx:100785695 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0345 8 5647719 5654248 Ssu3g2765 3 81969858 81976717 PCT