Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2765 ATGAACAAGCGGCAAGAAGACGAGCGTAACATAGCTACCCTCGACTCCAGATTCAATCAGACCCTCAGAAATGTTCAAGGGTTACTGAAAGGTCGTAGCATGCCCGGTAAAATATTATTGAGCCGTAGGTCAGACTCTCCAGGTAACTCAAACTTGAAGGTATCCTCACCAAATTACCAAAGGAGCTTTTCTCACAATGACGCTGGCACAAGTGATCACACGTCTGGGGCAGAAGAGGAGGAATTTCAGAGTACAAGCAAACCAATTAGTATTGCTAATGTCAGTAAGCTAAAAGTGTCGGCCTCCCTTGGAGGGAGCCCGCCTGAAGAAATCCGCAAGTCTACCATGGGTGCTAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCTGGGACAGTGGTTATATTAGACAAGTTGCGTGAATTAGCTTGGAGTGGTGTTCCAGACAATATGCGTCCTGAAGTATGGAGACTTCTGTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTCTAAGAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGTTCAGATGACGAGGTCAACATGCTTTGTCAGATTGGTGTTGATTGTCCAAGAACTGTACCTGATGTTCCATTCTTCCAGCAACAGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGGGCCATTCGGCATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACAccatttttggttgttttcttATCAGAATATTTAGAAGGGGGTATAGATAATTGGTCAATGTCTGATTTATCTTCAGATATAATCTCTAATATAGAGGCTGACTGCTACTGGTGCTTGTCAAAGTTGCTTGATGGTATGCAGGACCATTACACATTCGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCTGGAGGATTGATGAGCCTGTTTCACAACACATGGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTTTTCTAATCCGTGAGATACCATTCCATCTCATCACACGCCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTAGTATATATATCTGCCAGCTTCCTTCTAACGTGGTCAGACAAGCTCCAGAAACTTGATTTCCAAGAATTGGTAATGTTCCTTCAACACCTTCCAACACAGAACTGGACTCACCAGGAGCTTGAGATGGTGCTTTCCCAGGCATTTATGTGGCACAGCATGTTCAACAACTCTCCGAGCCATTTAGCTAGCTGA 1344 0.4315 MNKRQEDERNIATLDSRFNQTLRNVQGLLKGRSMPGKILLSRRSDSPGNSNLKVSSPNYQRSFSHNDAGTSDHTSGAEEEEFQSTSKPISIANVSKLKVSASLGGSPPEEIRKSTMGARATDSARVMKFTKVLSGTVVILDKLRELAWSGVPDNMRPEVWRLLLGYAPPNSDRREGVLRRKRLEYLDCVSQYYDIPDTERSDDEVNMLCQIGVDCPRTVPDVPFFQQQQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGGIDNWSMSDLSSDIISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVWRIDEPVSQHMEDQGLEFLQFAFRWFNCFLIREIPFHLITRLWDTYLAEGDALPDFLVYISASFLLTWSDKLQKLDFQELVMFLQHLPTQNWTHQELEMVLSQAFMWHSMFNNSPSHLAS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2765 447 Gene3D - 312 447 - -
Ssu3g2765 447 Gene3D - 127 178 - -
Ssu3g2765 447 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 128 337 IPR035969 -
Ssu3g2765 447 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 187 311 - -
Ssu3g2765 447 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 6 444 - -
Ssu3g2765 447 ProSiteProfiles TBC/rab GAP domain profile. 150 377 IPR000195 -
Ssu3g2765 447 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 6 444 - -
Ssu3g2765 447 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 313 435 IPR035969 -
Ssu3g2765 447 Pfam Rab-GTPase-TBC domain 153 399 IPR000195 -
Ssu3g2765 447 SMART tbc_4 147 403 IPR000195 -
Ssu3g2765 447 MobiDBLite consensus disorder prediction 43 71 - -
Ssu3g2765 447 MobiDBLite consensus disorder prediction 36 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2765 Ssu-Chr3 81969858 81976717 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2765 K20360 - gmx:100819281 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0345 8 5647719 5654248 Ssu3g2765 3 81969858 81976717 PCT