Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0342 ATGATGGGAAACAAATTACTATGCGTTCTTGTAGCGGTGGCCTTTGTTATGATAACGAAGGTGCCCAAAAATGTGAGTGCCCAAAACTGTGGGTGTGCTGAAGGGTTATGTTGCAGCCAATATGGGTATTGTGGTACCGGTGACGCCTACTGCGGCACAGGGTGCCAGCAGGGTCCTTGTTATGGGAGCCAAAGCCCACCAAGTTCCCCTAACAATGTTAATGTGGCTGACATTGTCACACCACAATTCTTCAATGGCATAATTGATCAAGCTGACTCTAGTTGTGCAGGGAAGAACTTCTACTCACGAGATGCTTTTCTTAATGCTCTCAATTCCTATAATCAGTTTGGTAGGATTGGTTCCGACGATGACTCCAAGCGCGAGATTGCAGCAGCTTTTGCCCATTTCACACATGAAACTGGACATTTTTGTTACATTGAAGAGATTGATGGTGCATCGAAGGACTATTGTGACGAAACGAATACACAATATCCGTGTGCTCCTAACAAAGGCTACTATGGGCGTGGTCCGATCCAATTATCTTGGAACTTCAACTATGGACCAGCGGGACAGAGCAACGGTTTTGATGGATTGAACTCTCCCGAAACAGTGGCCAATGATCCTGTGGTGTCCTTCAAGACAGCATTATGGTACTGGATGCAACACGTGCGCCCCGTCATCAACCAAGGCTTTGGGGCGACCATCAGAGCCATTAATGGTCAACTTGAATGTGATGGTGCCAACCCCACCACAGTTCAAGCTCGCGTTAATTACTACACTGAATATTGTAGACAATTGGGTGTTGCTCCTGGTGATAATCTTACCTGCTAA 831 0.4645 MMGNKLLCVLVAVAFVMITKVPKNVSAQNCGCAEGLCCSQYGYCGTGDAYCGTGCQQGPCYGSQSPPSSPNNVNVADIVTPQFFNGIIDQADSSCAGKNFYSRDAFLNALNSYNQFGRIGSDDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDETNTQYPCAPNKGYYGRGPIQLSWNFNYGPAGQSNGFDGLNSPETVANDPVVSFKTALWYWMQHVRPVINQGFGATIRAINGQLECDGANPTTVQARVNYYTEYCRQLGVAPGDNLTC 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0342 276 ProSitePatterns Chitinases family 19 signature 1. 95 117 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu8g0342 276 SUPERFAMILY Plant lectins/antimicrobial peptides 25 65 IPR036861 GO:0008061
Ssu8g0342 276 ProSitePatterns Chitin recognition or binding domain signature. 32 51 IPR018371 GO:0008061
Ssu8g0342 276 ProSitePatterns Chitinases family 19 signature 2. 210 220 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu8g0342 276 PRINTS Chitin-binding domain signature 30 38 IPR001002 GO:0008061
Ssu8g0342 276 PRINTS Chitin-binding domain signature 38 45 IPR001002 GO:0008061
Ssu8g0342 276 PRINTS Chitin-binding domain signature 45 52 IPR001002 GO:0008061
Ssu8g0342 276 SUPERFAMILY Lysozyme-like 74 276 IPR023346 -
Ssu8g0342 276 PANTHER CHITINASE-RELATED 7 276 - -
Ssu8g0342 276 ProSiteProfiles Chitin-binding type-1 domain profile. 27 62 IPR001002 GO:0008061
Ssu8g0342 276 Pfam Chitinase class I 78 222 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu8g0342 276 Pfam Chitinase class I 229 276 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu8g0342 276 Gene3D Endochitinase, domain 2 149 202 - -
Ssu8g0342 276 Gene3D - 62 276 - -
Ssu8g0342 276 PIRSF Endochitinase 1 276 IPR016283 GO:0004568|GO:0005975
Ssu8g0342 276 Pfam Chitin recognition protein 27 60 IPR001002 GO:0008061
Ssu8g0342 276 CDD chitinase_GH19 79 276 - -
Ssu8g0342 276 CDD ChtBD1 32 56 - -
Ssu8g0342 276 SMART ChitinBD_3 29 60 IPR001002 GO:0008061
Ssu8g0342 276 Gene3D - 24 61 IPR036861 GO:0008061
Ssu8g0342 276 PANTHER ENDOCHITINASE EP3-LIKE 7 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0342 Ssu-Chr8 5627378 5628381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0342 9 276 Glycoside Hydrolase AT3G54420 73.881 7.85e-145 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0342 K01183 - gmx:100776582 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0342 8 5627378 5628381 Ssu3g2770 3 82012355 82013298 PCT