Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2770 ATGAGCAAGTTACAAAGCATTCCTGTTGCAGGATTTGTGGCAACCTTTGTCATCATGGTGATAATGACGATGCCCAAAAACGTGAGTGCCCAAAACATAGCTGACATCGTCACAGAAGAATTCTTCAACAGTATAATCGATCAGGCTGATGATAGTTGTGAAGGGAAGAACTTCTACTCAAGAGATGCTTTCCTCAATGCTCAGAATGCCTACGATCAGTTTGGTAGGCTTGGTAACGAGGAAGAGTCCAAGCGTGAGATTGCAGCTGCTTTTGCCCATTTCACCCATGAAACTGGACATTTTTGCTACATAGAAGAGATTGATGGTGCATCAAGGGACTACTGTGACGCAAGCAACACCGAGCACCCGTGTGCCCCTAACAAAGCGTACTATGGGCGTGGACCCATCCAACTATCATGGAACTTCAACTACGGACCAGCAGGGGAGAGTAACAATTTTGATGGATTGAACGCACCAGAGACGGTGGCCAGTGACCCTGTGGTGTCCTTCAAGACAGCATTGTGGTACTGGATGGAACATGTGCGCCCTGTCATCAACCAGGGGTTTGGCGCAACCATCAGAGCTATCAATGGCCAACTTGAATGTGATGGAGCAAACCCCAAAACTGTTCAGGCTCGTGTTAATTACTACACCCAGTATTGTTCACAGCTTGGTGTTGCTCCTGGTGACAATCTTACttgctaa 705 0.4681 MSKLQSIPVAGFVATFVIMVIMTMPKNVSAQNIADIVTEEFFNSIIDQADDSCEGKNFYSRDAFLNAQNAYDQFGRLGNEEESKREIAAAFAHFTHETGHFCYIEEIDGASRDYCDASNTEHPCAPNKAYYGRGPIQLSWNFNYGPAGESNNFDGLNAPETVASDPVVSFKTALWYWMEHVRPVINQGFGATIRAINGQLECDGANPKTVQARVNYYTQYCSQLGVAPGDNLTC 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2770 234 PANTHER ENDOCHITINASE EP3-LIKE 15 234 - -
Ssu3g2770 234 PIRSF Endochitinase 4 234 IPR016283 GO:0004568|GO:0005975
Ssu3g2770 234 PANTHER CHITINASE-RELATED 15 234 - -
Ssu3g2770 234 Gene3D - 31 234 - -
Ssu3g2770 234 SUPERFAMILY Lysozyme-like 33 234 IPR023346 -
Ssu3g2770 234 CDD chitinase_GH19 37 234 - -
Ssu3g2770 234 ProSitePatterns Chitinases family 19 signature 1. 53 75 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu3g2770 234 ProSitePatterns Chitinases family 19 signature 2. 168 178 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu3g2770 234 Pfam Chitinase class I 187 234 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu3g2770 234 Pfam Chitinase class I 36 180 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu3g2770 234 Gene3D Endochitinase, domain 2 105 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2770 Ssu-Chr3 82012355 82013298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2770 25 234 Glycoside Hydrolase AT3G54420 71.905 1.56e-115 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2770 K01183 - gmx:100527091 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2770 3 82012355 82013298 Ssu3g2770 3 82012355 82013298 ECH
Ssu8g0342 8 5627378 5628381 Ssu3g2770 3 82012355 82013298 PCT