Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0339 ATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAATGCAGACAAAGTTTTGgaatcattttgaaaatggcTCGCTTAACAAGGGATGGTTCTTTACGAGGACAGAAATCTGGTGCAGAATTTGTCAGCAAGCCCCCTtcaaagattttaattatacctTCCGAAGACCTTGTCCAAGTCACAGCACAGGAAGTTGCTATTACCAGGGATGGCTTACCTAATGAATCTCACCATGATATGCATCAGGAAATCATGGTTGATTCATTGATATCTCAATCTCGTCACATTGAGCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGATGATCCACAATGCCCTGAACTGGAAAACATATTTGACGGCCGTTGGAATAGgGGATGGGATCAGTTTGAAACAAACAAGACATTGTTTGGTGTAAAAAGCACATTCAATGAGGAACTCTATACAACAAAGCTTGAAAAAGGGCCTCAGACAAGAGAATTGGAAAAGCAAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAAGAAACCCAAGATCTTCATCTTGCAGAGGAAAGAGGCCTTCACTTACATGAAGACTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCTATAGGGGTAAACGGGTTGATGACAGTGGATTTGATGATGACATACTGTTTGATTCACACAATTCTGAAACTTTTGGTGTATTTGATTCGGTCTTTAAGAAGCCTGGTGAAATAAGTGGTGGAAAAGGAAATGATGGAGCTCGAACATTGGCAAATTCCTCCTCCATGGATCACACACAATCATCTCAGTCAAGTACCGGTGTTGATTTAAGCCGCTCTGGTTCTTATAATCACGCGAAGCAGTTAGCATCTGAACTCCCCGCCAAAAGCTACTCGCCATCAGATGGGGAAAGCAGGATTCAAGAGAACTCAAATAGTAATCAACATGGAGACAATGGTAACCCCAAGGAAGAAAATCTGATTCAAGCTGAGGATGTTCAACCGTCAAAATCTGAGGATTCACAAGGACCACCCTACTTGAAGAAGGATGGCTCTGATAAAGGGGTATTATCTCCTAATGCCAGCTCCTATGCCCCTTCATCTCATACTTTATCAAAAAGTCATGAGAAGATGGGATCCAATGGAGATTTGATTGAGGGTTCAGCATCTGGCAAGGCTAATGGGGAAACGAAATCTGTAAATTCACGTGGCACACCGTCTGGGTCAGATTCGGTTGGAGGCATGGCAGCATCTTCTGGTCCTGGTTTATCTCCAAGTTCATCAGTTAGTTCACTGTCTTCTGAAAAATCGACTCTGAATCCCAATGCAAAGGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGCCTCCCACTCCAGTATCTGATGGCTCCTTCTATTTTCCAGCTAATGTAACTACTGTACCTAGTATGCCAGGCATGCCCATGGGTATTGGAATTGGACCTACTTTTGCTGGTCCACAACCTATCATGTATAATCATCAGGTAGGACAAATGCCGTCTCAAGCATATTTTCCTCCGAATGCACCACAGTATGGACAGCTTCTTGGTCATCCTAGGCAAGCTTTATACATGCCGAGTTACCTGCCTGAAATGCCATACAAGGGACGGGATTATTGA 1695 0.4201 MSYWAPGGSPGEKWIHILWNISCNKCRQSFGIILKMARLTRDGSLRGQKSGAEFVSKPPSKILIIPSEDLVQVTAQEVAITRDGLPNESHHDMHQEIMVDSLISQSRHIELGRELKPWVPDEDDPQCPELENIFDGRWNRGWDQFETNKTLFGVKSTFNEELYTTKLEKGPQTRELEKQALRIAREIEGEETQDLHLAEERGLHLHEDFDIDEETRFSSVYRGKRVDDSGFDDDILFDSHNSETFGVFDSVFKKPGEISGGKGNDGARTLANSSSMDHTQSSQSSTGVDLSRSGSYNHAKQLASELPAKSYSPSDGESRIQENSNSNQHGDNGNPKEENLIQAEDVQPSKSEDSQGPPYLKKDGSDKGVLSPNASSYAPSSHTLSKSHEKMGSNGDLIEGSASGKANGETKSVNSRGTPSGSDSVGGMAASSGPGLSPSSSVSSLSSEKSTLNPNAKEFKLNPNAKSFIPSPARPPTPVSDGSFYFPANVTTVPSMPGMPMGIGIGPTFAGPQPIMYNHQVGQMPSQAYFPPNAPQYGQLLGHPRQALYMPSYLPEMPYKGRDY 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0339 564 MobiDBLite consensus disorder prediction 405 460 - -
Ssu8g0339 564 MobiDBLite consensus disorder prediction 266 300 - -
Ssu8g0339 564 Pfam Ataxin-2 C-terminal region 448 460 IPR009818 -
Ssu8g0339 564 MobiDBLite consensus disorder prediction 257 478 - -
Ssu8g0339 564 Pfam LsmAD domain 152 222 IPR009604 -
Ssu8g0339 564 MobiDBLite consensus disorder prediction 369 390 - -
Ssu8g0339 564 SMART LsmAD_2 152 223 IPR009604 -
Ssu8g0339 564 PANTHER ATAXIN-2 HOMOLOG 25 557 - -
Ssu8g0339 564 Coils Coil 173 193 - -
Ssu8g0339 564 MobiDBLite consensus disorder prediction 314 335 - -
Ssu8g0339 564 PANTHER ATAXIN 2-RELATED 25 557 IPR045117 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0339 Ssu-Chr8 5589697 5595266 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0339 - - gmx:100782491 915.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0339 8 5589697 5595266 Ssu8g0339 8 5589697 5595266 ECH
Ssu8g0339 8 5589697 5595266 Ssu4g3163 4 80112465 80120345 PCT