Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3163 ATGAATTTGCAACAAATTGGGCACCCTAAATCATCTAATGGATACGGTCGTCGGAAATCTGAGAAAGAAGGGGCAACTAAGTCCGACAATAAGATCCCCTCTGGAAAATCAAATGCCAGCAGCAGATTAGCAACTACAGgCGTAGTGACTGGCAATAAAGGTGGTAGTTATGGGAGTCCTTCACATGATCGACTAGTATATTTAACTACATGCCTTATTGGGCAGCATGTGGAAGTCCAGGTGAAAAATGGATTTATATACTCTGGAATATTTCATGCAACAAATACTGACAAAGATTTTGgaatcattttgaaaatggcTCGCTTGACAAAGGATGGCTCTTTGCAAGGGCAGAGATCTGGTGTAGAATTTGTCAGCAAAGCTCCTTCCAAGACTTTAATTGTACCTGCCAATGACCTTGTACAAGTTATAGCGAAGGATGTTGCTGTTTCCAGAGATGGCCTACCTAGTGAATCTCACTATGATATGCATCATGAAATCATGGTTGATTCAGTAATCTCTCAATCTCGTCATGTTGAGATAGGGAGAGAATTACAGCGATGGGTACCCGATGAAGATCATCCACAATGCCCTGAACTGGAAAATATCTTTGATGGGCCTTGGAATAGgGGATGGGATCAGTTTGAAACAAATGAAATGTTGTTCGGCGTAACAAGCACGTTTAATGAGGAGTTCTATACAACAAAGCTTGAAAAAGGGCCTCAGACAAGAGAGTTGGAAAAGCAAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTAGCAGAGGAAAGAGGTCTTTACTGTAACTTTGATATTGATGAAGAAACCAGATTCTCTTCAGTCTATAGGGGTAAGGGTGTTGATGATAGTGGATATGATGAAAATGAGGACAATCTGTCGGATACACACGATTCTGAAACGTTTggtaatatttatgatttagtCATTAAGAGACCAGGTGAAGCAAGTGGTCCAAAAGGCAATAATGGAGCTCAAACGTGGTCAAATTTCTCCTCTGTGGATCACTCAGAGTTATCTCAGTCAAGTACTGGTGTGGATTTATGTCGCTCTGGTTCTAATGATCATGCCAAGCAGTTAGCATCTGAACTCCCTGCCCAGAGTTGCACATTTTCAGATGGAGAAAGCAGGATTCAGGATAACTCGGTGAATAACCTACATGGAGCCAATGATAATACTGTGGAAGAAAATTGGATACAAGCTGAGGATGTCCAACTGTCAAAATCTGAGGATTTACAGTCATCACTTAAGTTGAAGAAAGATGGCTCTAATGAAGGGGGGTTGTCTCCAAATGGGGCTGCCTATACCCCTTCTACTGGTATTTTATCAAAGACTCCTGAAGAAACTGGGTCAGTTGGGGAAACTAAGTCTGTAATTTCACGTGGGAGACTAGGTAGTTGTACATCATTAGGTTCTGATTGTGTGGCAGCAACCTCTGGTCCTGGTCTATCACCAAGTTCTTCACTTGGTTCACTGTCTTCGGAAAAATCGACTCTGAATCCCAATGCCAAGGAGTTTAAGCTCAACCCTAATGCAAAAAGTTTTATTCCATCCCAAACACATGCTAGGCCCCGCTCCCCAGTGTCTGATGGTTCCTTCTATTTCCCAGCTACCGTATCCACCGTACCAAATATGCCAGCCATGCCCATGGGTATTGCAGTTGGAACTACTTTTGCGGGGCCACAACCTGTCATATATAATTCACAGGTGGCACAAATGCCATCCCAACCATATTATCCAAATGGACCACAGTATGGACAACTTCTTGGTCCTCCTAGGCAAGTTCTATACGTGCCAAGTCAACTACCTgAGATGCCATATAAGGGACGGGATTATTGA 1878 0.4185 MNLQQIGHPKSSNGYGRRKSEKEGATKSDNKIPSGKSNASSRLATTGVVTGNKGGSYGSPSHDRLVYLTTCLIGQHVEVQVKNGFIYSGIFHATNTDKDFGIILKMARLTKDGSLQGQRSGVEFVSKAPSKTLIVPANDLVQVIAKDVAVSRDGLPSESHYDMHHEIMVDSVISQSRHVEIGRELQRWVPDEDHPQCPELENIFDGPWNRGWDQFETNEMLFGVTSTFNEEFYTTKLEKGPQTRELEKQALRIAREIEGEETQDLHLAEERGLYCNFDIDEETRFSSVYRGKGVDDSGYDENEDNLSDTHDSETFGNIYDLVIKRPGEASGPKGNNGAQTWSNFSSVDHSELSQSSTGVDLCRSGSNDHAKQLASELPAQSCTFSDGESRIQDNSVNNLHGANDNTVEENWIQAEDVQLSKSEDLQSSLKLKKDGSNEGGLSPNGAAYTPSTGILSKTPEETGSVGETKSVISRGRLGSCTSLGSDCVAATSGPGLSPSSSLGSLSSEKSTLNPNAKEFKLNPNAKSFIPSQTHARPRSPVSDGSFYFPATVSTVPNMPAMPMGIAVGTTFAGPQPVIYNSQVAQMPSQPYYPNGPQYGQLLGPPRQVLYVPSQLPEMPYKGRDY 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3163 625 MobiDBLite consensus disorder prediction 14 29 - -
Ssu4g3163 625 MobiDBLite consensus disorder prediction 333 349 - -
Ssu4g3163 625 PANTHER ATAXIN-2 HOMOLOG 10 616 - -
Ssu4g3163 625 Coils Coil 243 263 - -
Ssu4g3163 625 MobiDBLite consensus disorder prediction 1 55 - -
Ssu4g3163 625 MobiDBLite consensus disorder prediction 423 467 - -
Ssu4g3163 625 MobiDBLite consensus disorder prediction 30 55 - -
Ssu4g3163 625 Pfam Ataxin 2 SM domain 62 146 IPR025852 -
Ssu4g3163 625 MobiDBLite consensus disorder prediction 293 310 - -
Ssu4g3163 625 SMART LsmAD_2 222 291 IPR009604 -
Ssu4g3163 625 MobiDBLite consensus disorder prediction 492 518 - -
Ssu4g3163 625 Pfam Ataxin-2 C-terminal region 508 519 IPR009818 -
Ssu4g3163 625 MobiDBLite consensus disorder prediction 326 349 - -
Ssu4g3163 625 MobiDBLite consensus disorder prediction 293 312 - -
Ssu4g3163 625 Pfam LsmAD domain 222 290 IPR009604 -
Ssu4g3163 625 PANTHER ATAXIN 2-RELATED 10 616 IPR045117 GO:0003723
Ssu4g3163 625 MobiDBLite consensus disorder prediction 442 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3163 Ssu-Chr4 80112465 80120345 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3163 - - gmx:100778053 1080.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3163 4 80112465 80120345 Ssu4g3163 4 80112465 80120345 ECH
Ssu8g0339 8 5589697 5595266 Ssu4g3163 4 80112465 80120345 PCT