Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0334 atggaagaagaagaagacatgTCGCCGCCGTTCTGGACGGAGAACGGCCGCCGCCGTCGTCTCCGCCGCTTGTACTCGCTGTTCCTCAGCTCCGGTGCACTTCTGATATGCGTTCTGGTGATTGCACTTGCATTCACGTTGGTCCTAATTCCCACGTTGCACTCTTTCGCTATTGACACTTTCAAACCTAATTCGGTGAAGAAGAGCTGGGCCTCCCTCAACTTGGTGCTCATCCTCTTCGCCATTCTCTGTGGCTTCCTCAGCAGGAACACCAACGAAAGCTTCTCCGACACGCCACACGAGTACGAGAAACCAAACCCGCCAACACCGCGACCGTGGCACGAGGAATCGGATCGAACGCCGTATAAATCGTGCAACATGCTCAGGAGCTTCAACTCCTACCCAGATCTCCGGCAAGAGTCGCCGTGGCTCGCCGCGGATGAACGGTGGCGATTTTACGACGACACGCACGTTAACGGTTACCGCGGATTTGACTTGGAAGAAGAGAGCGTCAAGAGCACAGAAGTGGTAGCGAAGGAGGTTCCTCCGCCGCCGCTAGTGGTGTCGCCACCACGAGCTCCGGCGGAGAGGAGAAGCGAgcaaaacaagaataaaaaaacaagtgcAGCTAAAGAGCTGTTGACATCTTTGaagggaaagaagaagaagaagaaacaaagacAAGAAAGCGTTGAAAATGTTAAGGGCATTGGAGATTCTGAACCTCCTTCACATCATCAACCGTCAtcagtttttcaaaataagtttcttTCCAAGAAAAGCAAGCACAAGAAACTTAACCCCGCTTCATCGCCGCCGCATGTTTCATTATCCAAAACCGAACCGGTTCATGGGGGTGTGGCTACTTCCCTTGGATTAAACAAGAGAGAGGGTTTCTTCCATGCCTTGGAAGAAAATGTGGTTACTGGTAATGAGTCACCTTTGAATCCGTTacctccgccgccgccgccgttCAAGATGCCGGCGTGGAAGTTCCAGGTGCAGGGTGACTTTGTTAGAATAGATAGCATAAGTAATTCGAGTAGTAGTTCGCGAGATTTGGAAGATGAAGTGGTGGAGTCACCGAGAAGTGAAGATGGTGGAGAACCTGGACCTGAAATCTTATTGCTCTATCCTAGACCTGATGTTGATACCAATAGGTTCAGAGCTGGTTTAAGGATGGAGGAGAAGCGGGGGATTGGTGCCTCCGATCTACGCAATTTACCAAAACGGGAAGCTGGACCAAGTAGAATTTAA 1257 0.4638 MEEEEDMSPPFWTENGRRRRLRRLYSLFLSSGALLICVLVIALAFTLVLIPTLHSFAIDTFKPNSVKKSWASLNLVLILFAILCGFLSRNTNESFSDTPHEYEKPNPPTPRPWHEESDRTPYKSCNMLRSFNSYPDLRQESPWLAADERWRFYDDTHVNGYRGFDLEEESVKSTEVVAKEVPPPPLVVSPPRAPAERRSEQNKNKKTSAAKELLTSLKGKKKKKKQRQESVENVKGIGDSEPPSHHQPSSVFQNKFLSKKSKHKKLNPASSPPHVSLSKTEPVHGGVATSLGLNKREGFFHALEENVVTGNESPLNPLPPPPPPFKMPAWKFQVQGDFVRIDSISNSSSSSRDLEDEVVESPRSEDGGEPGPEILLLYPRPDVDTNRFRAGLRMEEKRGIGASDLRNLPKREAGPSRI 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0334 418 MobiDBLite consensus disorder prediction 314 328 - -
Ssu8g0334 418 MobiDBLite consensus disorder prediction 310 329 - -
Ssu8g0334 418 MobiDBLite consensus disorder prediction 386 418 - -
Ssu8g0334 418 MobiDBLite consensus disorder prediction 175 289 - -
Ssu8g0334 418 MobiDBLite consensus disorder prediction 95 119 - -
Ssu8g0334 418 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 181 408 - -
Ssu8g0334 418 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 103 - -
Ssu8g0334 418 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 118 181 - -
Ssu8g0334 418 MobiDBLite consensus disorder prediction 353 367 - -
Ssu8g0334 418 MobiDBLite consensus disorder prediction 341 418 - -
Ssu8g0334 418 PANTHER COTTON FIBER (DUF761) 181 408 - -
Ssu8g0334 418 PANTHER COTTON FIBER (DUF761) 1 103 - -
Ssu8g0334 418 PANTHER COTTON FIBER (DUF761) 118 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0334 Ssu-Chr8 5543838 5545094 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0334 - - ccaj:109806555 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0334 8 5543838 5545094 Ssu4g3185 4 80664311 80665963 PCT