Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3185 ATGGAACAACAAGAGGGCGACACGTGGACAATGCCACCGTTCTGGGAAGCGGAGCACCGCGACCGCCGCCGCCTCCGCCGCTCTTACTCTCTGTTACTGACCTCCACCTCCCTCCTCGCACTCTTCCTCGTGATCGCTCTCGTGTTCGCGCTCATTGTGGTTCCCACGCTGCGCTCGTTCGCTTCCAACATCCTCAGACCCCGCACGGTGAAGAACAGCTGGGACTCCCTCAACCTCGTACTCGTTCTCTTCGCCATCGTTTGCGGCTTCCTCAGCAGAAACAACGCCGCCGAAACCCTAACACCGCGTTCTCGATACCACAATCACAGAACCTTCTCGAACCCTTCGACGCCGCCACATTGGTACCAATGCAATTATTCTCAGACTCCTCGTCGATCGTTTAACAGGTTGAGGAGCTTCAACTCCTACCCCGATCTCCGGCAACACATCGCCGCCGATGAACGGTTCCGGTTTCACGATGATACTCACCTCCTCCGCCACCCGAGACCCGAGgctgaagaagaagaagaaaaagaaatggtaaTTGAGAAAGTCGCCGCAGCGCCGCCGCAATCGCCGCCGGACGCTGTTCGGAGAAATGTCAAGCGAGCATATCGAGCGGAAACCATCGAGAAACGAGAAGAAAATGATTTAGATTTGAAGAATTCACCGCCGCCACGGTCGCCGCCGTCTCCTCCGCCGCCGGCGACGAGAAGGATAGGTGTTCGACCAAATGTCAAGCGAGCATATCAAGCGGAAACAATCGAGAAACACGAAACAAACGATTTGGATGCAAAGATTTCACCACCGCCACCGTCTCCTCCGCCGCCGGCGACGCGAACGAATGGTGTTCGACGAAATGTCAAGGCGGAAAGAAATGATTCGGTTGTGAAGAGttcgccgccgccgccgccgccggcGGAGGAGGGGAAGACGATGCAGGGTAAGAAGAAAAGAGGGATTGCTACTAAAGAGTTTTTGACATCTTTAAGAGGGACGAAGAAGAAACAAAGACAAAGAAGCgttgaaaattttgttagtattttaaattctgaGCCACTATTTCCACAACCGCCACCAGCTCCGCCGCCACCTAAGGTTTTTCAgaacttgttttctttgaagAAAGGGAAACACAAGAACCGCCACTTTGTTTCTGTGgcaacaaaaacaaacatatcAGACAAGAGGGAACATTCTTCTTCCTATAGGCTGGAAGACAAGGTGATGATGGCTGGCAATGAGTCACCACTGATCCCTATTCCTCCGCCGCCACCGCCGCCGCCGTTCAAGTTGCCGGCGTGGAAGTTCCGGGTGCAGGGTGACTTTGTTAGGGTAGATAGCATTGGTAGTTCACGTAGTGGGTCACCTGATTTGGACGAAGTTAGTGTGGAGTCTGTGGACACACCAACAAGAAGTACTCATGACGAAACAAGCCAATGCAATAGTCCTTTTGCCAAAGATGGTGAATATTCTGCAAGGGTGAGTGCACCCTCATTGTTCTGTCCCAGCCCTGATGTTGATACCAAGGCTGACAACTTCATTGAGAGCTTCAGGGCTGGTTTGAGGATGGCCAAGATGAACTCCATGAAGGAGAGGCAGGGGATTGGGAGGTCCAATCTTGGCCCTTCACCAAACCATGAATGGAACTAG 1653 0.4949 MEQQEGDTWTMPPFWEAEHRDRRRLRRSYSLLLTSTSLLALFLVIALVFALIVVPTLRSFASNILRPRTVKNSWDSLNLVLVLFAIVCGFLSRNNAAETLTPRSRYHNHRTFSNPSTPPHWYQCNYSQTPRRSFNRLRSFNSYPDLRQHIAADERFRFHDDTHLLRHPRPEAEEEEEKEMVIEKVAAAPPQSPPDAVRRNVKRAYRAETIEKREENDLDLKNSPPPRSPPSPPPPATRRIGVRPNVKRAYQAETIEKHETNDLDAKISPPPPSPPPPATRTNGVRRNVKAERNDSVVKSSPPPPPPAEEGKTMQGKKKRGIATKEFLTSLRGTKKKQRQRSVENFVSILNSEPLFPQPPPAPPPPKVFQNLFSLKKGKHKNRHFVSVATKTNISDKREHSSSYRLEDKVMMAGNESPLIPIPPPPPPPPFKLPAWKFRVQGDFVRVDSIGSSRSGSPDLDEVSVESVDTPTRSTHDETSQCNSPFAKDGEYSARVSAPSLFCPSPDVDTKADNFIESFRAGLRMAKMNSMKERQGIGRSNLGPSPNHEWN 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3185 550 MobiDBLite consensus disorder prediction 223 239 - -
Ssu4g3185 550 MobiDBLite consensus disorder prediction 528 550 - -
Ssu4g3185 550 Pfam Cotton fibre expressed protein 505 534 IPR008480 -
Ssu4g3185 550 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 132 260 - -
Ssu4g3185 550 PANTHER COTTON FIBER (DUF761) 132 260 - -
Ssu4g3185 550 PANTHER COTTON FIBER (DUF761) 1 123 - -
Ssu4g3185 550 MobiDBLite consensus disorder prediction 533 550 - -
Ssu4g3185 550 MobiDBLite consensus disorder prediction 466 486 - -
Ssu4g3185 550 MobiDBLite consensus disorder prediction 448 487 - -
Ssu4g3185 550 MobiDBLite consensus disorder prediction 208 245 - -
Ssu4g3185 550 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 298 545 - -
Ssu4g3185 550 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 123 - -
Ssu4g3185 550 PANTHER COTTON FIBER (DUF761) 298 545 - -
Ssu4g3185 550 MobiDBLite consensus disorder prediction 257 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3185 Ssu-Chr4 80664311 80665963 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3185 - - gmx:100799093 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0334 8 5543838 5545094 Ssu4g3185 4 80664311 80665963 PCT