Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0305 ATGACAGACAGGGTGTACCCTTCGGCCAAGCCCGCCGTCAACGGCAACGGCGCCGCCGCCAACCCATCTTTCCCGGCGACAAAGGCCCAACTCTACGGCGCCACCCGCCCCACCTACCGCCCCCAGCCCCACCACCACCGCCGCCGCAGCCGGCGCCGGTGCTGCTGCACCTTCTGCTTCTGGCTCATCCTCACCGTCCTCGTCGTCCTCCTCCTCCTCGGCATCGCCGGCACCATCTTCTACCTCCTCTACCGCCCCCACCGCCCCACCTTCACCGTCACGTCCCTGAAACTATCCTACCTGAACCTCACCTCCTCCTCCACCCTCAACTCCCGCTTCGACCTCAACGTCTCCACCACCAACCCCAACAAGAAGATCCTCTTCGCCTACGACCCCACCACCATCTCCATTCTCTCCGGCGACGTCGACGTCGGCGACGGCACCGTCCCCGCCTTCGAGCACGGCAGGAAGAACACCACGCTGCTGAAAGCCTCGATCCTCAGCACCGGCCACGCGCTCCAGAGCGACCAGGCGTCGCGCTTGAAGGCCAGCATGAAGGGCAAGAACGGGTTCCCGCTGAAGGTGAATTTGGAGACCAAGGTGAAGGCCAAGATGGGGAGCTTGAAGACCCCAAAGGTCGGAATCAGAGTCTCCTGCGACGGAATCAGAGTCACTCTTCCCGCCGGCAAGAAACCGGCCACGGCCTCCACTTCTGACGCCAAGTGCGAGGTCGATGTTAGGTTCAAGATCTGGAAGTGGACCGTTTGA 768 0.6328 MTDRVYPSAKPAVNGNGAAANPSFPATKAQLYGATRPTYRPQPHHHRRRSRRRCCCTFCFWLILTVLVVLLLLGIAGTIFYLLYRPHRPTFTVTSLKLSYLNLTSSSTLNSRFDLNVSTTNPNKKILFAYDPTTISILSGDVDVGDGTVPAFEHGRKNTTLLKASILSTGHALQSDQASRLKASMKGKNGFPLKVNLETKVKAKMGSLKTPKVGIRVSCDGIRVTLPAGKKPATASTSDAKCEVDVRFKIWKWTV 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0305 255 MobiDBLite consensus disorder prediction 1 24 - -
Ssu8g0305 255 Pfam Late embryogenesis abundant protein 117 219 IPR004864 -
Ssu8g0305 255 PANTHER CHAPERONIN CPN60-LIKE PROTEIN 6 254 - -
Ssu8g0305 255 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 6 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0305 Ssu-Chr8 5147446 5148213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0305 28 243 EF-hand Containing Proteins AT5G21130 27.064 3.10e-20 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0305 - - gmx:100819194 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0305 8 5147446 5148213 Ssu4g3238 4 81844637 81845377 PCT