Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3238 atgACCGACAGGGTCCACCCTTCCGCCAAGCCCACCGCCAACGGCGGCCCCAAGCCAACATTCCCCGCCACAAAATCGCAGCTTTCCAGCGCCAACCGTCCCGCCTACCGCCCCCAACCGCCCCAGCACCGCCGCGGATGCGCCTGCACCCTCTGCTGCTACCTCCTCCTGatcctcttcttcctcctcctcctcgcCGGCGGCGCCGGCACCGTCCTCTACTTCCTTTACCGCCCCCACCGCCCCACGTTCTCCGTCACGTCCCTCAAACTCTCCTCCCTCAACCTCACCACCCTCAGCGCCAAGTTCGACCTCACTCTCTCGACCACAAACCCCAACGACAAAATCCTCTTCTCCTACGACCCCACCTCCGTCTCCGTCCTCTCCGGCGACGCCCACCTCGCGGCCGCCACCATCCCCTCCTTCCTCCACCGCCAGAGGAACACCACCGTGCTCGAGGCTTCGCTGGAGAGCGCCGAGGGAGCGGCGGAGAGCGACGCCGCCACGCAGCTGAAGAGCAGCATGAGGAGCAAGAGCGAGGTGGCGCTGAAGGTGATGCTGGACACCAAGGTGGCGGCCCAGATGGGAGCGTTCCGGACGCCGCGCGTTGGAATAAGAGTTTCGTGTGACGGCGTCGCCGTATCTCTCCCCGACGGCGACAAACCGGCCACGGCGTCCGCTGAGAATACGGAGTGCGAAGTGGACGTGAGGTTCAAGGTGTGGAAATGGACCCTGGGATGA 741 0.6329 MTDRVHPSAKPTANGGPKPTFPATKSQLSSANRPAYRPQPPQHRRGCACTLCCYLLLILFFLLLLAGGAGTVLYFLYRPHRPTFSVTSLKLSSLNLTTLSAKFDLTLSTTNPNDKILFSYDPTSVSVLSGDAHLAAATIPSFLHRQRNTTVLEASLESAEGAAESDAATQLKSSMRSKSEVALKVMLDTKVAAQMGAFRTPRVGIRVSCDGVAVSLPDGDKPATASAENTECEVDVRFKVWKWTLG 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3238 246 PANTHER CHAPERONIN CPN60-LIKE PROTEIN 2 244 - -
Ssu4g3238 246 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 2 244 - -
Ssu4g3238 246 Pfam Late embryogenesis abundant protein 106 209 IPR004864 -
Ssu4g3238 246 MobiDBLite consensus disorder prediction 1 42 - -
Ssu4g3238 246 MobiDBLite consensus disorder prediction 19 36 - -
Ssu4g3238 246 SUPERFAMILY LEA14-like 58 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3238 Ssu-Chr4 81844637 81845377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3238 36 231 EF-hand Containing Proteins AT5G21130 25.000 4.13e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3238 - - gmx:102669753 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0305 8 5147446 5148213 Ssu4g3238 4 81844637 81845377 PCT