Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0302 ATGGCGTCAATTGGTGCAGTCAAATTCGTGCTGTACCTAGTTCTATGGCTCGTCAACTATGTATCACTTTCTCAAGGTAAGCAGAACTGGAATGATGTGTACCCATTTATCAGAAGAGCAAGCTCATTGGGGTCTTCTTCACCCAATAGTGGGTATGACTATATAATAGTGGGAGGAGGCACAGCAGGGTGTCCATTGGCTGCAACCCTGTCTCAGAAGTTCAATGTTCTGCTGCTTGAAAGAGGAGGAGTCCCTTTCAACAACCCCAATGTGTCATTTCTACAGAACTTTCACATTACATTGGCGGACACTTCACCAACTTCGGCTTCCCAATATTTCATTTCAACAGATGGAGTCCTCAATGCAAGGGGAAGAGTTTTGGGTGGCGGCAGTTCCATTAACGCTGGCTTCTACACTAGAGCAAACCCAAGATTTATACGGAAGGTGGGGTGGGAAACTCAGCTAGTGAATGAGTCTTATCCTTGGGTTGAGAAGCAGATTGTTCACCGCCCAGAGTTTTCAGATTGGCAGAGAGCAGTTAGGGACGGGCTTCTAGATGCTGGTGTGTCTCCTTTTAATGGCTTCACCTATGATCATAAGCATGGAACCAAAGTTGGTGGAACCATTTTTGACAGATTTGGCCGCCGCCACACTGCTGCTGAACTGCTTGCTTCTGCGAATCCTCGCAAACTTACTGTTTTGATCCATGCCACTGTCCAAAAGATTGTTTTTGATACAACAGGAAAAAGACCAAAATCTACGGGGGTTATTTTCAAGGATGAAAATGGGAAGCAGCATCAGGCATTTCTGGGAACTGACAGGCAGAGTGAGGTGATTGTGTCTAGTGGGGCAATTGGGACTCCTCAATTGCTATTGCTCAGTGGAATTGGCCCCAAAGAAGAGCTTCAGAAATCGAACATCCCTGTGGTGCTTGACAACAAATTTGTTGGGAAAGGCATGGCTGATAACCCCATGAACACAATTTTTGTTCCTTCTAAGAGACCAGTTCACCAGTCACTCATAGAAACGGTTGGTATAACCAATTTGGGTGTGTACATTGAGACTAGTAGTGGGTTTGGGCAGTCCAAAGACAGCATTCACTGCCACCACGGTATCTTGTCAGCTGAGATTGGGCAGCTGTCAACAATTCCACCCAAGCAAAGATCACATGAAGCTGTTGAAGCTTTTGTGAAGAGCAAGAGAGACATACCGGTTGAAGCATTCAGGGGAGGGTTCATATTGTCAAAAGTTGCCAACCCTTGGTCAACAGGTGAGCTCAGGTTGATAAACACCAACGTGGAGGACAACCCTGCTATTACCTTCAACTACTTCAGTCACCCTTATGATCTTAAGCGCTGTGTGGAGGGGATCCGCTTGGCCATGAAGGTTGTCCAGTCAGAGCACATCACAAACTACACTTTATGTGACAGACAAACTGCAGAGAAAATGCTTAACCTCAGTGTGAAGGCTAATGTCAACCTCATACCCAAGCATGCCAATGACACAAAGTCACTAGAGCAGTTTTGTAGAGATTCTGTGATCACTATTTGGCACTACCATGGTGGGTGCCATCTGGGGAAGGTAGTCAACTCTGAGTATAAAGTTCTTGGTGTTGACAGGCTCCGTGTGGTAGATGGTTCAACATTTACTGAGTCACCAGGAACCAACCCTCAAGCTACTGTGATGATGATGGGCAGGTACATGGGACTGAAGATTTTAAGGGATAGGTTGGGAAAATTGGCTGGTATTTAA 1752 0.4583 MASIGAVKFVLYLVLWLVNYVSLSQGKQNWNDVYPFIRRASSLGSSSPNSGYDYIIVGGGTAGCPLAATLSQKFNVLLLERGGVPFNNPNVSFLQNFHITLADTSPTSASQYFISTDGVLNARGRVLGGGSSINAGFYTRANPRFIRKVGWETQLVNESYPWVEKQIVHRPEFSDWQRAVRDGLLDAGVSPFNGFTYDHKHGTKVGGTIFDRFGRRHTAAELLASANPRKLTVLIHATVQKIVFDTTGKRPKSTGVIFKDENGKQHQAFLGTDRQSEVIVSSGAIGTPQLLLLSGIGPKEELQKSNIPVVLDNKFVGKGMADNPMNTIFVPSKRPVHQSLIETVGITNLGVYIETSSGFGQSKDSIHCHHGILSAEIGQLSTIPPKQRSHEAVEAFVKSKRDIPVEAFRGGFILSKVANPWSTGELRLINTNVEDNPAITFNYFSHPYDLKRCVEGIRLAMKVVQSEHITNYTLCDRQTAEKMLNLSVKANVNLIPKHANDTKSLEQFCRDSVITIWHYHGGCHLGKVVNSEYKVLGVDRLRVVDGSTFTESPGTNPQATVMMMGRYMGLKILRDRLGKLAGI 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0302 583 Gene3D - 169 515 - -
Ssu8g0302 583 Pfam GMC oxidoreductase 420 566 IPR007867 GO:0016614
Ssu8g0302 583 ProSitePatterns GMC oxidoreductases signature 2. 283 297 IPR000172 GO:0016614|GO:0050660
Ssu8g0302 583 PIRSF Alcohol_oxidase 34 582 IPR012132 GO:0050660
Ssu8g0302 583 SUPERFAMILY FAD-linked reductases, C-terminal domain 320 522 - -
Ssu8g0302 583 PANTHER OSJNBA0019K04.7 PROTEIN 2 583 - -
Ssu8g0302 583 SUPERFAMILY FAD/NAD(P)-binding domain 49 575 IPR036188 -
Ssu8g0302 583 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 2 583 - -
Ssu8g0302 583 Pfam GMC oxidoreductase 52 324 IPR000172 GO:0016614|GO:0050660
Ssu8g0302 583 Gene3D - 52 565 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0302 Ssu-Chr8 5110162 5119705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0302 11 576 Miscellaneous Gene Families AT5G51950 49.212 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0302 K15403 - gmx:100818122 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0302 8 5110162 5119705 Ssu4g3240 4 81863561 81871335 PCT