Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3240 ATGGCTTCAGTTGGTGCAGTCAAATTCTTGTGCCTAATTCTATGGCTCTGGAACTTTCTACCTTCTTGTCAAGGTAAGCAGAACTGGCATGAAAATCGATACCCTTTTATCAGAAATGCAAGCTCGTTCTCATCACCATCAATTTCaactaccaccaccaacaaTGCCTATGACTACATAATAGTGGGAGGTGGCACAGCAGGGTGTCCTTTGGCTGCAACCCTCTCTCAGAACTTCAGTGTTCTGGTGCTTGAAAGAGGGGGTCTTCCTTTCACCAACCCCAATGTTTCATTTCTAGACAACTTCCACATTACCTTGGCAGACATTTCACCAGCTTCAGCTTCTCAATACTTCATTTCAACTGATGGAGTATACAATTCAAGGGCAAGGGTCTTGGGGGGTGGCAGTTCTATCAATGCTGGCTTCTACACAAGAGCAAGCCCAAGGTTTATAAAGAAGGTGGGGTGGGATGCCAAGCTAGTAAATCAGTCATACCCATGGGTTGAGAAGCAAATTGTTCACCGTCCAAAGTTTTCACCTTATCAGAGAGCAGTGAGGGACAGTCTTCTAGACTCTGGTGTGTCACCTTTTAATGGCTTCACCTATGATCATATCTATGGAACCAAGGTTGGTGGAACCATTTTTGACAGATTTGGCCGCCGCCACACGGCTGCTGAACTGCTTGCTTCAGGAAACCCTGACAAACTTACTGTTTTGATCTATGCCACTGTCCAAAAGATTGTCTTTGATACAAGAGGAAAGAGACCAAAAGCCGTGGGGGTTATTTTCCAAGATGAAAATGGGAAACAGCATGAGGCTATTCTGGAAAATGATAGGCATAGTGAAGTGATAATGTCTAGTGGGGCAATTGGGACTCCTCAATTGCTAATGCTTAGTGGAATTGGGCCAAAAGCAGAACTCCAGAAGTTGAACATCCCAGTGGTCCTTGGCAACCTATTTGTTGGGAAAGGAATGGTAGACAATCCCATGAACACAATGTTTGTTCCTTCTAATAGACCAGTTTATCAGTCACTCATAGAAACTGTTGGTATCACCAAGATGGGTGTGTATATTGAGGCCAGCAGTGGGTTTAGTCAGTCCAATGATAGCATTCACTGCCACCATGGTATTATGTCAGCTGAGATTGGGCAGCTGTCCACAATTCCTCCTAGGCAAAGATCACGAGAAGCTATTCAAGATTTTATCAAGAACAAGCGAGACCTACCGGTTGAAGCATTCAAGGGAGGCTTTATTTTGTCAAAAGTTGCCAATCCTTGGTCAGTAGGTGAGCTCAGGCTGAATAACACCAATGTGAATGACAACCCTGCCATTACCTTCAACTACTTCAGTCATCCATATGATCTTCAGCGCTGCGTTAAGGGGATCCGCTTGGCCATTAAGGTAGTCCAGTCACGACACTTCACAAACTACACCTTGTGTAACAGACAAACCACAGAGAAATTGCTCAACCTCACTGTCAAGGCTAATGTCAACTTCATACCCAAGCATCCCAATGACACAAAGTCAATAGAGCAGTTCTGCAAAGACACTGTGATCACAATTTGGCACTACCATGGAGGGTGCCATGTGGGGAAGGTAGTCAGCCCTGATTACAAGGTTCTTGGTGTTGACAGACTCCGTGTGGTAGATGGCTCAACATTTGATGAATCACCAGGAACAAATCCTCAAGCCACTGTCATGATGATGGGCAGGTACATGGGACTGAAGATTTTGAGAGATAGGTTGGGGAAATTGGCTGGTATATAA 1767 0.4431 MASVGAVKFLCLILWLWNFLPSCQGKQNWHENRYPFIRNASSFSSPSISTTTTNNAYDYIIVGGGTAGCPLAATLSQNFSVLVLERGGLPFTNPNVSFLDNFHITLADISPASASQYFISTDGVYNSRARVLGGGSSINAGFYTRASPRFIKKVGWDAKLVNQSYPWVEKQIVHRPKFSPYQRAVRDSLLDSGVSPFNGFTYDHIYGTKVGGTIFDRFGRRHTAAELLASGNPDKLTVLIYATVQKIVFDTRGKRPKAVGVIFQDENGKQHEAILENDRHSEVIMSSGAIGTPQLLMLSGIGPKAELQKLNIPVVLGNLFVGKGMVDNPMNTMFVPSNRPVYQSLIETVGITKMGVYIEASSGFSQSNDSIHCHHGIMSAEIGQLSTIPPRQRSREAIQDFIKNKRDLPVEAFKGGFILSKVANPWSVGELRLNNTNVNDNPAITFNYFSHPYDLQRCVKGIRLAIKVVQSRHFTNYTLCNRQTTEKLLNLTVKANVNFIPKHPNDTKSIEQFCKDTVITIWHYHGGCHVGKVVSPDYKVLGVDRLRVVDGSTFDESPGTNPQATVMMMGRYMGLKILRDRLGKLAGI 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3240 588 ProSitePatterns GMC oxidoreductases signature 2. 288 302 IPR000172 GO:0016614|GO:0050660
Ssu4g3240 588 Gene3D - 174 520 - -
Ssu4g3240 588 PIRSF Alcohol_oxidase 37 587 IPR012132 GO:0050660
Ssu4g3240 588 SUPERFAMILY FAD/NAD(P)-binding domain 48 580 IPR036188 -
Ssu4g3240 588 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 2 588 - -
Ssu4g3240 588 SUPERFAMILY FAD-linked reductases, C-terminal domain 325 527 - -
Ssu4g3240 588 Pfam GMC oxidoreductase 57 329 IPR000172 GO:0016614|GO:0050660
Ssu4g3240 588 Pfam GMC oxidoreductase 425 571 IPR007867 GO:0016614
Ssu4g3240 588 Gene3D - 57 570 IPR036188 -
Ssu4g3240 588 PANTHER OSJNBA0019K04.7 PROTEIN 2 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3240 Ssu-Chr4 81863561 81871335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3240 13 581 Miscellaneous Gene Families AT5G51950 50.943 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3240 K15403 - gmx:100788704 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0302 8 5110162 5119705 Ssu4g3240 4 81863561 81871335 PCT