Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0300 ATGAAGGAGTGTAAATTAAGTGAATGTGGGCTTTCCTACGCCGTAGTTTCTATTATGGGTCCACAAAGTAGTGGGAAGAGCACGCTCTTGAATAGTTTGTTTTGTACTAACTTCAGAGAGATGGATGCATTTAAGGGAAGGCATGACGTGCTTGTTTTCAGGTCTCAAACAACCAAAGGAATTTGGATGGCTAAATGTATTGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGTGGAGAGGATGATACTGCATTTGAGAAGCAGAGTGCTTTATTTGCTTTGGCTATTTCTGATATAGTGCTAATAAACATGTGGTGTCATGACATTGGCCGCGAGCAAGCTGCAAATAAGCCGCTTTTAAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGTCCGCGCAAAACAACATTGCTGTTTGTCATACGTGATAAGACAAAGACACCGCTTGAAAACTTAGAGCCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCAGAGGCCCATAAGGAAACCCCATTAAGTGAATTTTTCAACGTTGAAGTTGTTGCTCTTTCTAGTTTcgaagaaaaggaagaacaaTTTAAGGAACAGgTTGCCAACTTGAGGCAACAATTCTATCATTCTATCGCTCCCGGTGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCAGGCTTTTCTTTTAGTGCTCAGGAAATCTGGAAAGTCATCAAGGAGAACAAGGATCTCGACCTTCCTGCACACAAGGTCATGGTTGCTACTGTACGATGTGAAGAAATTGCTAATGAGAAATATGACCTTTTTGCTGCAAATAAGGACTGGTGTCAGTTGGAAGAGGCAGTGCAATCTGGCCCTATTTCTGGATTCGGGAAAAAGCTCAATTCACTCCTTACTGCTCGTCTTTCAGAGTATGATGCTGAAGCCACTTATTTTGACGAAGGTGTCAGATCTGCAAAACAAAAGCAACTTCAAGAAAAACTATTTCAACTTGTTCAACCAGCATTCCAAATTGTGCTGGGACATATAAGGTCCGGAATTTTGGATAAGTTCAAGGCAGCATTTGACAAGGCTTTGAATGGAGGGGAAGGGTTTTCTTCTGCTGCTAATAAGTGCGTAGAGTCTTATATGGCTCAGTTTGATGAAGGATGTGCAGATGTTGTTATTGAAATAGCAAGCTGGGATACATCCAAAGTGAGGGAGAAGCTACAGCGTGATATTGATGCACATGTCATATCTGTGCGTGCATCCAAGATGTCCGAACTTGTGTCATCATATGAGGAAAAACTGAAGGAGGCCTTGTCTGGACCTGTTGAAACTATATTGGATGGAGCTAATAGTGATACTTGGCCATCAATAAGGAAACTTCTTAACCGTGAAACTCAATCAGCTGTTTCTGGGTTCTCTGCTGAACTTACCAGATTTGATATGgatgaacaaacaaaaaagaacatgATTGTGAGTTTAGAGGATTATGCAAAGGGTGTGATAGAAGCCAAGGCTAGGGAAGAAGCTGGAAGAGTTCTAATCCGTATGAAGGACAGGTTTATGACATTGTTTAGTCATGATTCTGATTCAATGCCTCGTATTTGGACGGGAAAAGAGGATATTCGAGCCATCACCAAGTCTGCTCGCTCTGCATGCTTGAAGTTGCTGTCTGTTATGGCTGTAATTCGTttggatgatgatgatgacatgTATGATATCGAGAAAACATTAACAGTTGCATTGGCAGATTCATCAAGCAGTTCTGTTAAGGATAAGAGCATCACGGCAGTTGAACCACTGGCTTCAAGCACTTGGGCGCAGATACCACCCTCTAAAACATTAATCACACCTGTCCAGTGCAAATCCTTGTGGAGGCAATTCAAGATGGAGACAGAATATAGTGTCTCTCAGGCCATTTCTGCACAGGAAGCCAACAATCGTAACAGCAATTGGTTGCCTCCACCATGGGCGATTGTTGCTTTGGTTATTCTTggatttaatgaatttatgacACTTTTAAGAAATCCCTTGTATTTAGGTGTCATCTTCGTTGGCTATCTTCTCATTAAAGCCCTGTGGGCGCAGCTTGACATTACGGGTGAATTTCGCAATGGAGCTcTTCCAGGAATCATATCCTTGTCTAGCAAGTTTGTTCCAACGATCATGAACCTTATCAGAAAACTAGCAGAGGAGGGACAGAATCCTGCAACTAACAATCCTCGGAGAAATCCATCAAAAAGCAATCGAAGTGCTGGTAGTGTTACGCCATCTAGTGCTTCTTCTAGTGTAACTTCAATGGCCAATGGAACCGAGTATACCAATCCATCAAAATATGAGTAG 2370 0.4097 MKECKLSECGLSYAVVSIMGPQSSGKSTLLNSLFCTNFREMDAFKGRHDVLVFRSQTTKGIWMAKCIGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLENLEPVLREDIQKIWDSVPKPEAHKETPLSEFFNVEVVALSSFEEKEEQFKEQVANLRQQFYHSIAPGGLAGDRRGVVPASGFSFSAQEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYDLFAANKDWCQLEEAVQSGPISGFGKKLNSLLTARLSEYDAEATYFDEGVRSAKQKQLQEKLFQLVQPAFQIVLGHIRSGILDKFKAAFDKALNGGEGFSSAANKCVESYMAQFDEGCADVVIEIASWDTSKVREKLQRDIDAHVISVRASKMSELVSSYEEKLKEALSGPVETILDGANSDTWPSIRKLLNRETQSAVSGFSAELTRFDMDEQTKKNMIVSLEDYAKGVIEAKAREEAGRVLIRMKDRFMTLFSHDSDSMPRIWTGKEDIRAITKSARSACLKLLSVMAVIRLDDDDDMYDIEKTLTVALADSSSSSVKDKSITAVEPLASSTWAQIPPSKTLITPVQCKSLWRQFKMETEYSVSQAISAQEANNRNSNWLPPPWAIVALVILGFNEFMTLLRNPLYLGVIFVGYLLIKALWAQLDITGEFRNGALPGIISLSSKFVPTIMNLIRKLAEEGQNPATNNPRRNPSKSNRSAGSVTPSSASSSVTSMANGTEYTNPSKYE 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0300 789 MobiDBLite consensus disorder prediction 742 789 - -
Ssu8g0300 789 Coils Coil 198 218 - -
Ssu8g0300 789 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 10 232 IPR030386 GO:0005525
Ssu8g0300 789 Hamap Protein SEY1 [SEY1]. 1 743 IPR008803 -
Ssu8g0300 789 Gene3D - 2 230 IPR027417 -
Ssu8g0300 789 CDD GBP 9 224 - -
Ssu8g0300 789 MobiDBLite consensus disorder prediction 741 789 - -
Ssu8g0300 789 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 19 261 - -
Ssu8g0300 789 Pfam Sey1 three-helix bundle domain 303 741 IPR046758 -
Ssu8g0300 789 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 1 772 - -
Ssu8g0300 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 229 IPR027417 -
Ssu8g0300 789 PANTHER PROTEIN SEY1 1 772 IPR008803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0300 Ssu-Chr8 5077266 5086670 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0300 K22698 - gmx:100797516 1358.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0300 8 5077266 5086670 Ssu4g3241 4 81899060 81908154 PCT