Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3241 ATGGCAAATAGTGGTAGTTGTTGTTCAACTCAGCTTATTGATGGAGATGGTACATTCAATGCTTCTGGGGTTGAGAACTTTATGAAGGAGGTGAAATTGGCTGAATGTGGGCTTTCGTATGCTGTAGTTTCTATAATGGGTCCACAAAGTAGTGGCAAGAGCactctattaaattatttgtttggtACCAACTTCAGAGAGATGGATGCTTTTAAGGGAAGGTCTCAAACAACCAAAGGAATCTGGATGGCTAGATGTACCGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACAGATGGAAGAGAACGAGGagagGATGACACTGCTTTTGAAAAGCAGAGTGCTCTATTTGCTCTTGCTGTCTCAGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGCCGTGAGCAAGCTGCAAATAAGCCACTTTTGAAAACTGTCTTTCAGGTCATGATGAGATTGTTTAGTCCACGAAAAACAACATTGTTGTTTGTCATACGTGATAAAACAAGGACACCACTTGAAAATTTAGAACCTGTTTTGCGAGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCACAGGCCCACAAGGAAACCCCACTAAGTGAATTTTTCAACGTTGAAGTTGTTGCTCTTTCTAGTtatgaagaaaaggaagagcAGTTTAAAGAGCAGGTTGCCAGCTTGCGGCAACGATTCCATCATTCTATCGCTCCTGGTGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCTGGCTTTTCTTTTAGCTCTGAGCATATATGGAAAGTCATTAAGGAGAACAAAGATCTCGACCTTCCTGCACATAAgGTTATGGTTGCTACTGTACGATGTGAAGAAATCGCCAATGAGAAATATGCCTCTTTTGTTGCAAATGAGGATTGGTGTCAATTGGAAGAGGCTGTGCAATCTGGCCCTATTCCTGGATTTGGGAAAAAGCTCAGTTCACTCCTTGATACTTGTTTATCAGAGTATGATGCTGAAGCCACGTATTTTGATGAAGGTGTGAGATCTGCCAAACAAAAGCaactacaagaaaaattattcCAGGTTGTCCAACCAGCATTCCAATCTGCGCTGGGACATATAAGATCTGGAACTTTGGATAAATTCAAGGAGGCATTTGACAAGGCTTTGAATGGGGGGGAAGGGTTTTCTGTGGCTGCTAATAAGTGCCTCGAGTCTTGTATGGTTCAATTTGATGAAGCATGTGCAGaaaaaaaaactgatataTTATCGTTGCAGATGTTGTTATTGAGCAAACAAACTGGGATACATCTAAAGTACGAGAGAAACTGCAGGCGTGATATTGATGCACATGTTGCAACTGTACGTGCAACCAAGATTTCTGAACTTACTTCATCATATGAGgaaaaacttaaagaagcTTTGTCTGGACCTGTTGAAGCTCTTTTGGATGGAGCTAGTAGCGATACTTGGCCATCAATAAGGAACCTTGTTAGGCGTGAGACTCAATCAGCTGTTTCTGGGTTCTCTGCTGCACTTACTGGGTTTGATATGGATGAAGAAACAAGGCAGAAAATGATTTTGAGTTTAGAGGATTATGCAAGGGGTCTGGTAGAAGGAAAGGCTAGGGAAGAAGCTGGAAGAGTTCTAATCCGCATGAAGGACAGGTTTACGATGTTGTTTAGCCATGATTCTGATTCAATGCCTCGTGTTTGGACTGGTAAAGAAGATATACGAGCCATCACCAAGACTGCTCGCTCTGCTTCTTTGAAGTTGCTATCTGTTATGGCTGCAATTCGTTTGGATGATGATGACTCTGACAATATTGAAAAAGTATTAGCAGTTGCATTGGTGGATTCATCATCAGGTAGTGCTGTTACAAGGAGCATCACAATGGTTGATCCACTAGCTTCTAGCAGCTGGGAACAGGTTTCATCCTCTAAAACATTGATTACACCTGTCCAGTGCAAGTCTTTGTGGAGGCAATTCAAGACAGAGACAGAGTACAGTGTCTCTCAGGCCATTTCCGCACAGGAGGCCAACAAGCGCAACAACAACTGGTTACCTCCCCCATGGGCAATAGTTGCTTTGGTTATCCTTggatttaatgaatttatgacACTTCTAAGAAATCCCTTGTATTTGGGTGTCATCTTTGTTGGTTTTCTTCTCATTAAAGCCCTGTGGGTGCAGCTTGACATTGCGGGCGAATTTCGCAATGGAGCCcTTCCCGGAATCATATCCTTGTCTAGCAAGTTTGTTCCTACCATCATGAACcttatgaaaagactagcaGAGGAGGGACAGAACCCTGCAGCTAACAATCCCCAGAGAACCCCATCAAAAAACAGTTACAATGAGAGTCGTGCCATGTCATCTAGCGCTTCATCTAACTTGACTTCATTGGACAACGGAACCGAGTATGCCAGCCCATTAAAAGATGAGTAG 2457 0.4115 MANSGSCCSTQLIDGDGTFNASGVENFMKEVKLAECGLSYAVVSIMGPQSSGKSTLLNYLFGTNFREMDAFKGRSQTTKGIWMARCTGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSEFFNVEVVALSSYEEKEEQFKEQVASLRQRFHHSIAPGGLAGDRRGVVPASGFSFSSEHIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYASFVANEDWCQLEEAVQSGPIPGFGKKLSSLLDTCLSEYDAEATYFDEGVRSAKQKQLQEKLFQVVQPAFQSALGHIRSGTLDKFKEAFDKALNGGEGFSVAANKCLESCMVQFDEACAEKKTDILSLQMLLLSKQTGIHLKYERNCRRDIDAHVATVRATKISELTSSYEEKLKEALSGPVEALLDGASSDTWPSIRNLVRRETQSAVSGFSAALTGFDMDEETRQKMILSLEDYARGLVEGKAREEAGRVLIRMKDRFTMLFSHDSDSMPRVWTGKEDIRAITKTARSASLKLLSVMAAIRLDDDDSDNIEKVLAVALVDSSSGSAVTRSITMVDPLASSSWEQVSSSKTLITPVQCKSLWRQFKTETEYSVSQAISAQEANKRNNNWLPPPWAIVALVILGFNEFMTLLRNPLYLGVIFVGFLLIKALWVQLDIAGEFRNGALPGIISLSSKFVPTIMNLMKRLAEEGQNPAANNPQRTPSKNSYNESRAMSSSASSNLTSLDNGTEYASPLKDE 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3241 818 CDD GBP 36 239 - -
Ssu4g3241 818 Coils Coil 218 238 - -
Ssu4g3241 818 Pfam Sey1 three-helix bundle domain 323 770 IPR046758 -
Ssu4g3241 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 276 IPR027417 -
Ssu4g3241 818 MobiDBLite consensus disorder prediction 771 818 - -
Ssu4g3241 818 PANTHER PROTEIN SEY1 4 811 IPR008803 -
Ssu4g3241 818 MobiDBLite consensus disorder prediction 773 810 - -
Ssu4g3241 818 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Ssu4g3241 818 Hamap Protein SEY1 [SEY1]. 9 775 IPR008803 -
Ssu4g3241 818 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 4 811 - -
Ssu4g3241 818 Gene3D - 15 245 IPR027417 -
Ssu4g3241 818 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3241 Ssu-Chr4 81899060 81908154 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3241 K22698 - gmx:100777656 1466.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0300 8 5077266 5086670 Ssu4g3241 4 81899060 81908154 PCT