Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0297 ATGGTTATGTGCTTCAAGCTCATAATGTGGAATGTGCTACTGCTTCTGGTTCTGGCTTGCTCTCTCACTGGTTCTGCTAAGGCCTCAGTGTCCTATGACTCAAAGGCTATCACCATTAATGGCCAGAGAAGGATCCTCATTTCTGGATCCATTCATTACCCAAGAAGCACCCCTGagATGTGGCCAGATCTTATTCAGAAGGCCAAGGACGGGGGCTTGGATGTGATTCAGACTTATGTTTTCTGGAATGGTCACGAGCCTTCACCTGGCAAGTATTATTTTGAGGGGAACTATGATCTGGTGAAGTTCATAAAGCTGGTGCAGCAAGCAGGCCTCTATGTTCATCTCAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTCGGGGGTTTCCCTGTTTGGCTAAAGTACATTCCAGGAATCAGCTTCAGAACAGACAATGGTCCATTTAAGtatcaaatgcaaaaatttacCACGAAGATTGTTGATTTGATGAAAGCGGAGAGGTTATATGAGTCTCAGGGAGGTCCAATAATTATGTCGCagattgaaaatgaatatggACCTATGGAGTATGAAATTGGTGCTCCCGGTAAAGCTTACACTAAGTGGGCTGCAGAAATGGCTATAGGACTTGGTACTGGGGTTCCATGGGTCATGTGCAAGCAAGATGACACTCCTGATCCTCTTATTAACACTTGCAATGGCTTCTACTGTGATTATTTCTCTCCAAATAAGGCTTACAAGCCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACTGAGTTTGGAGGTCCTGTTCCTCATCGACCTGCTGAAGACTTGGCCTTTTCAGTTGCAAGGTTTATACAGAAAGGGGGatcatttgtaaattattacatgTATCATGGGGGAACAAATTTTGGTCGAACTGCTGGTGGTCCCTTTATTGCTACGAGCTATGATTATGATGCACCACTTGATGAATATGGATTGCTCAGGCAACCAAAGTGGGGTCATCTGAAGGATTTACACAGAGCAATAAAACTCTGTGAACCAGCCTTAGTATCGGGAGATCCTACTCTAACAAAGATTGGAAACTATCAAGAGGCTCATGTCTTTAAATCAAAGTCTGGAGCTTGTGCTGCATTCCTTGCAAACTACAACCCAAAATCTTTTGCAACAGTGGCATTTGGAAATATGCATTACAACTTGCCTCCTTGGTCTATAAGCATTCTTCCTGACTGCAAGAACACTGTCTATAACACTGCAAGgGTTGGTTCTCAGAGTGCCCAGATGAAGATGACTCGTGTTCCTATTCATGGCGGACTCTCTTGGCAATCATTCAATGAAGAAACAACGACTACTGATGATAGTTCCTTCACCATGACTGGCCTGTTGGAGCAGTTAAATACAACAAGAGACTTAACTGACTACTTGTGGTACTCCACAGATGTTGTGATTGATCCCAATGAAGGATTTCTCAGAAACGGAAAGGATCCTGTTCTTACTGTGTTTTCTGCTGGGCATGCTTTGCATGTTTTTATAAATGGTCAGCTATCAGGAACTTCATATGGAAGCTTAGAATTCCCTAAACTGACATTTAATGAGGGAGTGATGCTCAGAGCTGGTGTTAACAAGATCTCTCTTCTAAGTGTTGCAGTTGGACTCCCGAATGTTGGTCCTCATTTTGAAACTTGGAATGCTGGTGTTCTTGGCCCAATTTCATTAAATGGTCTCAACGAAGGGAGAAGGGACTTGTCTTGGCAGAAATGGTCTTACAAGgTTGGTCTTAAAGGTGAAACCTTGAGTCTTCACTCTCTCAGTGGAAGTTCCTCAGTGGAGTGGATTCAGGGATCTTTAGTTTCTCGAAGGCAGCCATTGACTTGGTACAAAACAACTTTTGACGCACCAGCTGGGACTGCACCATTGGCTTTAGACATGGACAGCATGGGCAAAGGTCAAGTATGGTTAAATGGACAGAATCTTGGCCGCTATTGGCCTGCTTATAAAGCATCTGGTACCTGTGATTACTGTGACTATGCTGGAACTTATAATGAGAATAAATGCAGAAGTAACTGCGGCGAGGCTTCTCAAAGATGGTATCATGTTCCTCATTCATGGCTAAAGCCAACTGGTAACTTGTTGGTTGTGTTTGAAGAGCTAGGTGGAGACCCCAATGGAATCTTTTTGGTTAGAAGGGATATAGATAGTGTATGTGCTGATATTTATGAGTGGCAGCCAAATCTCATAAGCTATCAGATGCAAGCTTCTGGCAAAGCTAGCAAACCTGTGAGACCAAAAGTTCATTTATCATGTGGCCCTGGACAGAAAATCTCATCAATAAAATTTGCCAGCTTTGGTACTCCAGTAGGTTCTTGTGGAAACTTCCATGAAGGAAGCTGTCATGCTCACAAGTCTTATGATGCCTTCGAAAGGAATTGTGTTGGACAGAACTGGTGCACAGTTACAGTGTCACCTGAAAATTTTGGAGGAGATCCATGTCCAAATGTCATGAAGAAATTCTCAGTGGAAGCCATTTGTACCTGA 2532 0.4261 MVMCFKLIMWNVLLLLVLACSLTGSAKASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKYQMQKFTTKIVDLMKAERLYESQGGPIIMSQIENEYGPMEYEIGAPGKAYTKWAAEMAIGLGTGVPWVMCKQDDTPDPLINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGPVPHRPAEDLAFSVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGDPTLTKIGNYQEAHVFKSKSGACAAFLANYNPKSFATVAFGNMHYNLPPWSISILPDCKNTVYNTARVGSQSAQMKMTRVPIHGGLSWQSFNEETTTTDDSSFTMTGLLEQLNTTRDLTDYLWYSTDVVIDPNEGFLRNGKDPVLTVFSAGHALHVFINGQLSGTSYGSLEFPKLTFNEGVMLRAGVNKISLLSVAVGLPNVGPHFETWNAGVLGPISLNGLNEGRRDLSWQKWSYKVGLKGETLSLHSLSGSSSVEWIQGSLVSRRQPLTWYKTTFDAPAGTAPLALDMDSMGKGQVWLNGQNLGRYWPAYKASGTCDYCDYAGTYNENKCRSNCGEASQRWYHVPHSWLKPTGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLISYQMQASGKASKPVRPKVHLSCGPGQKISSIKFASFGTPVGSCGNFHEGSCHAHKSYDAFERNCVGQNWCTVTVSPENFGGDPCPNVMKKFSVEAICT 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0297 843 PANTHER BETA-GALACTOSIDASE RELATED 10 837 IPR001944 GO:0004553|GO:0005975
Ssu8g0297 843 Pfam Glycosyl hydrolases family 35 37 341 IPR031330 -
Ssu8g0297 843 SUPERFAMILY (Trans)glycosidases 30 346 IPR017853 -
Ssu8g0297 843 PRINTS Glycosyl hydrolase family 35 signature 647 663 IPR001944 GO:0004553|GO:0005975
Ssu8g0297 843 PRINTS Glycosyl hydrolase family 35 signature 309 325 IPR001944 GO:0004553|GO:0005975
Ssu8g0297 843 PRINTS Glycosyl hydrolase family 35 signature 61 79 IPR001944 GO:0004553|GO:0005975
Ssu8g0297 843 PRINTS Glycosyl hydrolase family 35 signature 289 304 IPR001944 GO:0004553|GO:0005975
Ssu8g0297 843 PRINTS Glycosyl hydrolase family 35 signature 116 135 IPR001944 GO:0004553|GO:0005975
Ssu8g0297 843 PRINTS Glycosyl hydrolase family 35 signature 173 188 IPR001944 GO:0004553|GO:0005975
Ssu8g0297 843 PRINTS Glycosyl hydrolase family 35 signature 252 267 IPR001944 GO:0004553|GO:0005975
Ssu8g0297 843 PRINTS Glycosyl hydrolase family 35 signature 620 634 IPR001944 GO:0004553|GO:0005975
Ssu8g0297 843 PRINTS Glycosyl hydrolase family 35 signature 40 57 IPR001944 GO:0004553|GO:0005975
Ssu8g0297 843 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Ssu8g0297 843 SUPERFAMILY Galactose-binding domain-like 404 575 IPR008979 -
Ssu8g0297 843 Pfam Beta-sandwich domain in beta galactosidase 349 420 IPR041392 -
Ssu8g0297 843 SUPERFAMILY Galactose-binding domain-like 584 749 IPR008979 -
Ssu8g0297 843 Gene3D Glycosidases 26 346 - -
Ssu8g0297 843 ProSiteProfiles SUEL-type lectin domain profile. 757 843 IPR000922 GO:0030246
Ssu8g0297 843 PANTHER BETA-GALACTOSIDASE 10 837 - -
Ssu8g0297 843 Gene3D - 753 843 IPR043159 -
Ssu8g0297 843 Pfam Galactose binding lectin domain 765 842 IPR000922 GO:0030246
Ssu8g0297 843 Gene3D - 600 734 - -
Ssu8g0297 843 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 175 187 IPR019801 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0297 Ssu-Chr8 5051127 5057064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0297 12 843 Glycoside Hydrolase AT3G13750 81.130 0.0 1450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0297 - - gmx:100811187 1695.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0297 8 5051127 5057064 Ssu8g0297 8 5051127 5057064 ECH
Ssu8g0297 8 5051127 5057064 Ssu4g3244 4 81937903 81943946 PCT