Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3244 ATGTTGCAGCTTCCGTGTCCTATGACCATAAGGCTATCACCTATCAATGGACAAAGAAGGATACTGCTTTCTGGCTCCATTCACTACCCCAGAAGCACCCCTGAGATGTGGCCAGATCTTATTCAGAAGGCAAAGGAAGGAGGTTTGGATGTGATTCAGACTTATGTATTCTGGAATGGACATGAACCTTCACCTGGCAAATATTATTTTGGGGGGAACTATGATCTGGTGAAGTTCATAAAGCTGGTGCAGCAAGCGGGCCTATATGTTAACCTCAGAATTGGTCCTTATGTTTGTGCTGAATGGAACTTTGGAGGTTTCCCtgtttggctcaagtacattcCAGGTATCAACTTCAGAACAGACAATGGACCGTTTAAGTttcaaatgcaaaaatttacCAAGAAGATTGTGGATATGATGAAAGCAGAAAGGTTATTCGAGTCTCAGGGTGGTCCAATCATTCTATCCCAGattgaaaatgaatatggACCTATGGAGTATGAAATTGGCGCTCCTGGTAGAGCCTACACTCAGTGGGCAGCACATATGGCTGTAGGACTTGGCACTGGTGTTCCATGGATCATGTGCAAGCAAGATGATGCTCCTGATCCTATTATTAACACTTGCAATGGCTTCTATTGTGATTATTTCTCTCCAAATAAGGCTTACAAACCAAAGATGTGGACTGAAGCTTGGACTGGCTGGTTTACCGAGTTTGGAGGTGCAGTTCCTCACAGACCTGCTGAGGACTTGGCATTTTCAATTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCAATTATTATATGTATCATGGGGGAACAAATTTTGGTCGAACTGCTGGTGGTCCCTTTATTGCTACGAGCTATGATTATGATGCGCCTATTGATGAATATGGACTGCCCAGACAGCCAAAGTGGGGTCATCTGAAGGACTTACATAGAGCAATCAAACTCTGTGAACCTGCTTTAGTATCTGGAGATCCTACTGTACAACGGCTTGGAAACTATGAAGAGGCTCATGTCTTTAAATCAAAGTCTGGAGCTTGTGCTGCATTCCTTGCGAACTACAACCCACAATCTTATGCAACAGTGGCATTTGGAAATCAGCATTACAACTTGCCACCTTGGTCTATAAGCATTCTTCCTAACTGCAAGCACACAGTTTATAACACTGCAAGGGTTGGTTCCCAGAGCACACAGATGAAGATGACTCGTGTTCCTATTCATGGAGGACTCTCTTGGAAAGCGTTTAATGAAGAGACAACCACTACTGATGATAGTTCCTTCACTGTGACTGGCCTGTTGGAGCAGATAAATGCAACCAGAGATTTATCTGACTACTTGTGGTACTCCACAGATGTTGTGATCAATCCCAACGAAGGATTTTTGAGGAATGGAAAGAATCCTGTTCTTACAGTTATGTCTGCTGGGCATGCTTTGCATGTTTTTATCAACAATCAGCTGTCAGGAACTGTATATGGAAGCTTAGAGTCCCCCAAACTAACCTTTAGTGAAAGTGTGAGGCTCAGAGCTGGTGTTAACAAAATCTCCCTTCTAAGTGTTGCAGTTGGGCTTCCGAATGTTGGTCCACATTTTGAAAGATGGAATGCCGGTGTTCTTGGTCCAATTACATTAAGTGGTCTCAATGAGGGGAGAAGGGACTTAACTTGGCAGAAGTGGTCATACAAGGTTGGTCTTAAAGGTGAAGCCTTGAATCTTCATTCTCTTAGTGGGAGTTCCTCTGTTGAGTGGCTTCAGGGGTATTTAGTTTCCCGAAGGCAGCCATTGACTTGGTACAAAACTACCTTTGATGCCCCAGCTGGAGTTGCACCAGTGGCTTTAGACATGGGCAGCATGGGCAAAGGTCAAGTGTGGATAAATGGACAAAGTCTGGGTCGCTACTGGCCTGCTTACAAAGCATCTGGTTCTTGTGGTTACTGTAACTATGCAGGAACTTACAATGAGAAGAAATGCGGAAGTAACTGTGGCGAGGCTTCTCAACGATGGTATCATGTTCCTCACTCGTGGCTGAAGCCAGCTGGAAATTTGTTGGTTGTGTTTGAGGAATTGGGCGGGGATCCGAACGGGATCTTTTTGGTCAGAAGGGATATAGATAGTGTATGTGCTGATATCTATGAGTGGCAGCCAAATCTTGTGAGTTATGAGATGCAAGCTTCTGGCAAAGTCAGAAGTCCTGTGAGACCAAAAGCACATTTGTCATGCGGTCCTGGACAAAAAATCTCATCAATCAAGTTTGCTAGCTTTGGCACTCCAGTAGGGTCTTGTGGAAACTACCGTGAAGGAAGTTGTCATGCTCACAAGTCATATGATGCTTTCCAAAAgAATTGTGTTGGGCAGAGCTGGTGCACAGTGACAGTATCACCTGAAATTTTTGGAGGAGATCCATGTCCAAGTGTCATGAAGAAACTCTCAGTGGAGGCTGTCTGCACCTGA 2460 0.4354 MLQLPCPMTIRLSPINGQRRILLSGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFGGNYDLVKFIKLVQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYIPGINFRTDNGPFKFQMQKFTKKIVDMMKAERLFESQGGPIILSQIENEYGPMEYEIGAPGRAYTQWAAHMAVGLGTGVPWIMCKQDDAPDPIINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGAVPHRPAEDLAFSIARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPIDEYGLPRQPKWGHLKDLHRAIKLCEPALVSGDPTVQRLGNYEEAHVFKSKSGACAAFLANYNPQSYATVAFGNQHYNLPPWSISILPNCKHTVYNTARVGSQSTQMKMTRVPIHGGLSWKAFNEETTTTDDSSFTVTGLLEQINATRDLSDYLWYSTDVVINPNEGFLRNGKNPVLTVMSAGHALHVFINNQLSGTVYGSLESPKLTFSESVRLRAGVNKISLLSVAVGLPNVGPHFERWNAGVLGPITLSGLNEGRRDLTWQKWSYKVGLKGEALNLHSLSGSSSVEWLQGYLVSRRQPLTWYKTTFDAPAGVAPVALDMGSMGKGQVWINGQSLGRYWPAYKASGSCGYCNYAGTYNEKKCGSNCGEASQRWYHVPHSWLKPAGNLLVVFEELGGDPNGIFLVRRDIDSVCADIYEWQPNLVSYEMQASGKVRSPVRPKAHLSCGPGQKISSIKFASFGTPVGSCGNYREGSCHAHKSYDAFQKNCVGQSWCTVTVSPEIFGGDPCPSVMKKLSVEAVCT 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3244 819 SUPERFAMILY Galactose-binding domain-like 380 551 IPR008979 -
Ssu4g3244 819 Gene3D Glycosidases 14 322 - -
Ssu4g3244 819 PRINTS Glycosyl hydrolase family 35 signature 149 164 IPR001944 GO:0004553|GO:0005975
Ssu4g3244 819 PRINTS Glycosyl hydrolase family 35 signature 228 243 IPR001944 GO:0004553|GO:0005975
Ssu4g3244 819 PRINTS Glycosyl hydrolase family 35 signature 37 55 IPR001944 GO:0004553|GO:0005975
Ssu4g3244 819 PRINTS Glycosyl hydrolase family 35 signature 285 301 IPR001944 GO:0004553|GO:0005975
Ssu4g3244 819 PRINTS Glycosyl hydrolase family 35 signature 623 639 IPR001944 GO:0004553|GO:0005975
Ssu4g3244 819 PRINTS Glycosyl hydrolase family 35 signature 92 111 IPR001944 GO:0004553|GO:0005975
Ssu4g3244 819 PRINTS Glycosyl hydrolase family 35 signature 596 610 IPR001944 GO:0004553|GO:0005975
Ssu4g3244 819 PRINTS Glycosyl hydrolase family 35 signature 16 33 IPR001944 GO:0004553|GO:0005975
Ssu4g3244 819 PRINTS Glycosyl hydrolase family 35 signature 265 280 IPR001944 GO:0004553|GO:0005975
Ssu4g3244 819 SUPERFAMILY Galactose-binding domain-like 560 723 IPR008979 -
Ssu4g3244 819 Gene3D - 426 563 - -
Ssu4g3244 819 PANTHER BETA-GALACTOSIDASE 15 813 - -
Ssu4g3244 819 Pfam Beta-sandwich domain in beta galactosidase 325 396 IPR041392 -
Ssu4g3244 819 Pfam Galactose binding lectin domain 741 818 IPR000922 GO:0030246
Ssu4g3244 819 SUPERFAMILY (Trans)glycosidases 15 322 IPR017853 -
Ssu4g3244 819 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 151 163 IPR019801 GO:0004553|GO:0005975
Ssu4g3244 819 Pfam Glycosyl hydrolases family 35 15 317 IPR031330 -
Ssu4g3244 819 Gene3D - 580 710 - -
Ssu4g3244 819 ProSiteProfiles SUEL-type lectin domain profile. 733 819 IPR000922 GO:0030246
Ssu4g3244 819 PANTHER BETA-GALACTOSIDASE RELATED 15 813 IPR001944 GO:0004553|GO:0005975
Ssu4g3244 819 Gene3D - 730 819 IPR043159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3244 Ssu-Chr4 81937903 81943946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3244 11 819 Glycoside Hydrolase AT3G13750 81.335 0.0 1409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3244 - - gmx:100785688 1669.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3244 4 81937903 81943946 Ssu4g3244 4 81937903 81943946 ECH
Ssu8g0297 8 5051127 5057064 Ssu4g3244 4 81937903 81943946 PCT