LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu8g0283	ATGGATAGGATGATGATGGAGCTTCATTCCCATGGAAAAACCATCGACGACACTGCGCAAGTTCTGCAGAGGATTCCTATTCACCCCAGAATAATCCCTGCCATTAAAGCGGCCCATGCTTTAGGGTGTGATTTGAGGATTGTAAGCGATGCAAATGCATTCTTCATCGAGACAATTTTGAAGCACTTAGGAATAAGGGAATGCTTCTCCGAGATTAACACCAACCCTGGCTGTGTTAACGAAGAGGGAAGGTTAAGAATTTTGCCTTACCATGACTTCAACAAATCTCCCCATGGATGCTGTTTGTGCCCTCCAAACATGTGCAAGGGTCTAATCATAGAGAGAATCCAAAACTCAGTGTCCGAAGCAGAAAATAAGAGATACATCTATCTTGGAGATGGTAGTGGAGATTACTGCCCAAGCTTGAGGCTTAAAGACCGAGACTTTGTGATGCCAAGGAAGAACTTTCCCGTGTGGGACTTAATATGTAAAGACCCTTCGCTTATTAAAGCTGAAATCCATGAATGGAGTGACGGAGAAGAGTTTGAACAAGTTTTGATGCAGCTAATCAACCAAATTTCTTTGGAGGAAAGTGCTCAAATCATTTCAGCCGATTGCAAGCTGCACAATCTATCTCTGCTCATGAGGCCTTTTCCTCAATGTGATAGTGATAATTGGGTTCTTGATGAATTCGGTTTAACTGAAAAATTCTATCAGCTTCTTCCTAGCATGCCTTGGAACCCTCTGAtggttttctttaatttcctttccttttcttgctTCAGATACAATGTTTTCCTAGCTTATTTCTTTCCTGATAgggaaataatttttgtttgtcctAAAATTTTACAGGACAAGATGATGAATGAACTTCATTCCCAAGGAAAAACCATTGAAGACATTGTACAAGTTCTGAACAGGACTCCAATCCATCCCCGTATTGTCACAGCCATTGAGGCAGCATATTCCCTTggGTGTGAGCTGAAGATTGTGAGCGAcgcaaatattttctttattgaaacaattttgaaGCATCATGGGGTGTGGAATTGTTTCTCGGAGGTCACTGCAAACCCCAGCTATGGATTGGTGATAGAAAGGATCCAAAATTCGCTTGATGCTGCAGGAAAGAAGAAATTCATCTATCTTGGAGATGGAAGTGGAGACTTTTGCCCTAGTTTGAAGCTCAAAGATAGGGATTATTTGATGCCAAGAATGAATTTCCCTTTGTGTGATTTAGTATCTAAAAGCTCAGATCTCATAAAGGCAGAGGTACATGCCTGGAGAGATGGGGAAGAGCTTTATGATGTTCTGCTCCATTTTATCAACAAAGCTATTGGTGAAGGAAACAGCATTATTAGTAGTTCTACTCCAACAATATCGGTTGATTGCAAGTTGGGGTCAATTTCAATTGGTGCTCATAAACCTTTCCCTAAAGCACTCCCAGTTCCTCAATAA	1461	0.3915	MDRMMMELHSHGKTIDDTAQVLQRIPIHPRIIPAIKAAHALGCDLRIVSDANAFFIETILKHLGIRECFSEINTNPGCVNEEGRLRILPYHDFNKSPHGCCLCPPNMCKGLIIERIQNSVSEAENKRYIYLGDGSGDYCPSLRLKDRDFVMPRKNFPVWDLICKDPSLIKAEIHEWSDGEEFEQVLMQLINQISLEESAQIISADCKLHNLSLLMRPFPQCDSDNWVLDEFGLTEKFYQLLPSMPWNPLMVFFNFLSFSCFRYNVFLAYFFPDREIIFVCPKILQDKMMNELHSQGKTIEDIVQVLNRTPIHPRIVTAIEAAYSLGCELKIVSDANIFFIETILKHHGVWNCFSEVTANPSYGLVIERIQNSLDAAGKKKFIYLGDGSGDFCPSLKLKDRDYLMPRMNFPLCDLVSKSSDLIKAEVHAWRDGEELYDVLLHFINKAIGEGNSIISSSTPTISVDCKLGSISIGAHKPFPKALPVPQ	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu8g0283	486	Gene3D	-	1	146	IPR023214	-
	Ssu8g0283	486	Gene3D	-	219	397	IPR023214	-
	Ssu8g0283	486	PANTHER	PHOSPHATASE, ORPHAN 1, 2	220	250	IPR016965	GO:0016791
	Ssu8g0283	486	PANTHER	PHOSPHATASE, ORPHAN 1, 2	284	362	IPR016965	GO:0016791
	Ssu8g0283	486	Pfam	Putative Phosphatase	1	190	IPR016965	GO:0016791
	Ssu8g0283	486	Pfam	Putative Phosphatase	285	362	IPR016965	GO:0016791
	Ssu8g0283	486	Pfam	Putative Phosphatase	363	442	IPR016965	GO:0016791
	Ssu8g0283	486	PANTHER	PHOSPHATASE, ORPHAN 1, 2	1	215	IPR016965	GO:0016791
	Ssu8g0283	486	SUPERFAMILY	HAD-like	270	393	IPR036412	-
	Ssu8g0283	486	SUPERFAMILY	HAD-like	2	144	IPR036412	-
	Ssu8g0283	486	PANTHER	PHOSPHATASE, ORPHAN 1, 2	363	486	IPR016965	GO:0016791
	Ssu8g0283	486	PANTHER	2,3-DIKETO-5-METHYLTHIO-1-PHOSPHOPENTANE PHOSPHATASE	1	215	-	-
	Ssu8g0283	486	TIGRFAM	HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB	1	142	-	-
	Ssu8g0283	486	TIGRFAM	DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase	1	154	IPR006384	GO:0016791
	Ssu8g0283	486	PANTHER	2,3-DIKETO-5-METHYLTHIO-1-PHOSPHOPENTANE PHOSPHATASE	363	486	-	-
	Ssu8g0283	486	PANTHER	2,3-DIKETO-5-METHYLTHIO-1-PHOSPHOPENTANE PHOSPHATASE	220	250	-	-
	Ssu8g0283	486	PANTHER	2,3-DIKETO-5-METHYLTHIO-1-PHOSPHOPENTANE PHOSPHATASE	284	362	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu8g0283	Ssu-Chr8	4845357	4866448	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu8g0283	K13248		-	gmx:100785878	358.992

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu4g3261	4	82195429	82197014	Ssu8g0283	8	4845357	4866448	ECH
	Ssu8g0283	8	4845357	4866448	Ssu8g0283	8	4845357	4866448	ECH
	Ssu8g0283	8	4845357	4866448	Ssu4g3261	4	82195429	82197014	PCT