Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3261 ATGGCTGGGATTGTAGTGATTTTTGACTTTGACTCAACAATCATTGAGTGTGATAGTGATAATTGGGTGCTTGACGAGACGGGTTTAACTGAAAAGTTCTATCAGCTTCTTCCTAGCATGCCTTGGAACCCTCTAAtgGATAGGATGATGAATGAACTTCATTCACAAGGAAAAACCATTCAAGACATTGAAGAAATTCTGAACAGGACTCCAATGCATCCCCGCATTGTCCCTGCTATTGAGGCAGCTTATTCCCTTGGGTGTGAGCTGAAGATTGTGAGTGAcgcaaatattttctttattgagACAATTCTGAAGCATCATGGAGTGTGGAATTGTTTCTCAGAGGTCATTGCCAACCCCAGCCATGTCAATGAAGGGAGGCTCAATATTTGTCCATACCATGATTATCTAAAATCTTCTCATGGATGCAATCTTTGTCCACCAAACATGTGCAAGGGATTGGTGATAGAAAGGATCCAAAATTCCCTTGCAGCAGCAGGAAAGAAGAAACTAATCTATCTTGGAGATGGAAATGGAGATTTTTGCCCTAGTCTGAAGCTCAAAGATAGTGACTATTTGATGCCTAGAACAGACTTTCCATTGTGTgatttagtttccaaaaattctaataagataaagGCAGAGGTACATGGCTGGAGAGATGGGAAAGAGCTTGAGCTTGTTCTGCTCCAACTTATCAACAAAGCTATTGGGGAAGGAAACAACATTAACAATTCTACTCAGAATGTCTCAGTTGATTGCAAGTTGGGGACAATTCCAATGGACACTCATCAACCTTTGCCTAAAGCCCTCTCAGTTCCTCATTAA 831 0.3911 MAGIVVIFDFDSTIIECDSDNWVLDETGLTEKFYQLLPSMPWNPLMDRMMNELHSQGKTIQDIEEILNRTPMHPRIVPAIEAAYSLGCELKIVSDANIFFIETILKHHGVWNCFSEVIANPSHVNEGRLNICPYHDYLKSSHGCNLCPPNMCKGLVIERIQNSLAAAGKKKLIYLGDGNGDFCPSLKLKDSDYLMPRTDFPLCDLVSKNSNKIKAEVHGWRDGKELELVLLQLINKAIGEGNNINNSTQNVSVDCKLGTIPMDTHQPLPKALSVPH 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3261 276 SUPERFAMILY HAD-like 5 184 IPR036412 -
Ssu4g3261 276 PIRSF PLP_phosphatas_PHOSPHO2 1 238 IPR016965 GO:0016791
Ssu4g3261 276 Pfam Putative Phosphatase 4 234 IPR016965 GO:0016791
Ssu4g3261 276 TIGRFAM DKMTPPase-SF: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 4 197 IPR006384 GO:0016791
Ssu4g3261 276 PANTHER PHOSPHATASE, ORPHAN 1, 2 1 275 IPR016965 GO:0016791
Ssu4g3261 276 PANTHER 2,3-DIKETO-5-METHYLTHIO-1-PHOSPHOPENTANE PHOSPHATASE 1 275 - -
Ssu4g3261 276 Gene3D - 2 189 IPR023214 -
Ssu4g3261 276 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 5 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3261 Ssu-Chr4 82195429 82197014 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3261 K13248 - gmx:100785357 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3261 4 82195429 82197014 Ssu8g0283 8 4845357 4866448 ECH
Ssu4g3261 4 82195429 82197014 Ssu4g3261 4 82195429 82197014 ECH
Ssu8g0283 8 4845357 4866448 Ssu4g3261 4 82195429 82197014 PCT