Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0267 ATGACGAGGCTCCTTAGAGCGATCTTCATCGCCCGCAAGCTCCACCTCCGCAACCCCAAATGCATTTTTCCACCTCTAGTTTCCGACTACTCCTCCGCAGCCACAGATTCCTCCGAAGCCAACAATGAGACCCACAAACCAGTAAACCAAACCACCGGCAGTTGGAGCAGCTATGGAAACGTCTTTGACCGCCCAGTTTCGCAGCCCGTGCCCAGCGACCAAAGCGACGAAGACGAAAACCCTAGCAGCGAGAGGGCACAGAGTGTAGCAGTGACGAAGAGAAAGGGGAAGGTGAAAACTCAGTGGGTGTGCGACAATTGTGGGTACACAACAGGGAAATGGTGGGGGGCATGCCCCTTCTGCGAAGTATCTGGCACAATGACAGAGTTTCACGAGAGCAAATTGACTGACAAGCCCAGAGGTGGGTTAGCCGTTTGCGAGGACGCCGTGGGCTTGTGGCTCCCACAACGGTCGGAAGAGTTGCGCCCCGTAAAACTGGATGAAGTGAACCGTGGATTCAATCACGAGAAATGGAGAATTCCTTTGGCTGGTTCTTTTGGAAATGAAGTTTCTACAGTGCTTGGTGGAGGTCTTGTACCAGGTTCTTTAACTTTAGTTGGTGGTGATCCTGGTATTGGGAAAAGTACTTTGCTGATGCAGATTGCAGCAATGATAGCAAAAGAAGGCTGTAATGGTGAAGCACCTCCAGTTGTATATGTCTCTGGTGAAGAGAGCCTTCAGCAAATTGGTACTAGAGCAGATCGCCTTGGGATTAaatccaatatttatttatattcaagtACTGATATTGAGGACATATTGATGAAAACTCATTGTCTATCCCCTCGTGCTCTGGTGGTTGATTCAATACAAACTGTTTACCTGAAAACAGTACTAGGAAGTGCTGGAGGGCTTACGCAGGTGAAGGAATGTACTACTGCTTTGATGCGATTTGCAAAAACAACTAACATCTCAGTTTTTTTGaTTGGACATGTGACCAAATCAGGAGAGATAGCGGGACCTCGTGTCTTGGAGCATATCGTTGATGTTGTTTTGTATATGGAAGGCGAGAAGTACTCTCCATATCGAATGCTTCGAGCTGTGAAAAATCGGTTTGGATCCATTGATGAGCTTGCAGTTTTTGAGATGTCACAGTCAGGACTCCAGGCTGTTTCAAATGCCACTGAAATGTTTCTCACTCAACAACACTCCAATTCAAATGTTTTAACAGGGCTTGCTATTGCTGTAATAATGGATGGTACAAgaacttttttaattgaaattcaggcACTTTGCCTTTCACATTGCTCCGGTACAAATTCGGTATTTAATGGGATCCAAGCAAACAAAGCTAATATGATTAAATGTGTTCTTATAAAGCAAGCAGGTCTTCATCTCCAAGAAAATGATATGTTTTTGAATGTTGTTAGTGGATTGACAATGACAGAGACTGCTGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTTCTTGGAGTTCCCTATTCCAGAGGGGACTGCATTCATTGGTGAAATTGGCCTTGGTGGAGAGCTTCGCATGGTAAGcatattctttttaatgttaaatgtTGACTCACAACCACAACTATGA 1614 0.4399 MTRLLRAIFIARKLHLRNPKCIFPPLVSDYSSAATDSSEANNETHKPVNQTTGSWSSYGNVFDRPVSQPVPSDQSDEDENPSSERAQSVAVTKRKGKVKTQWVCDNCGYTTGKWWGACPFCEVSGTMTEFHESKLTDKPRGGLAVCEDAVGLWLPQRSEELRPVKLDEVNRGFNHEKWRIPLAGSFGNEVSTVLGGGLVPGSLTLVGGDPGIGKSTLLMQIAAMIAKEGCNGEAPPVVYVSGEESLQQIGTRADRLGIKSNIYLYSSTDIEDILMKTHCLSPRALVVDSIQTVYLKTVLGSAGGLTQVKECTTALMRFAKTTNISVFLIGHVTKSGEIAGPRVLEHIVDVVLYMEGEKYSPYRMLRAVKNRFGSIDELAVFEMSQSGLQAVSNATEMFLTQQHSNSNVLTGLAIAVIMDGTRTFLIEIQALCLSHCSGTNSVFNGIQANKANMIKCVLIKQAGLHLQENDMFLNVVSGLTMTETAGDLAIAAAICSSFLEFPIPEGTAFIGEIGLGGELRMVSIFFLMLNVDSQPQL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0267 537 ProSiteProfiles RecA family profile 1. 179 332 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Ssu8g0267 537 PANTHER DNA REPAIR-LIKE PROTEINRADA 3 522 - -
Ssu8g0267 537 SMART AAA_5 200 358 IPR003593 -
Ssu8g0267 537 MobiDBLite consensus disorder prediction 33 92 - -
Ssu8g0267 537 PRINTS DNA repair protein radA signature 362 388 - -
Ssu8g0267 537 PRINTS DNA repair protein radA signature 192 220 - -
Ssu8g0267 537 PRINTS DNA repair protein radA signature 104 128 - -
Ssu8g0267 537 PRINTS DNA repair protein radA signature 327 355 - -
Ssu8g0267 537 PRINTS DNA repair protein radA signature 438 461 - -
Ssu8g0267 537 PRINTS DNA repair protein radA signature 288 312 - -
Ssu8g0267 537 PANTHER DNA REPAIR PROTEIN RADA 3 522 - -
Ssu8g0267 537 Pfam AAA domain 193 336 - -
Ssu8g0267 537 TIGRFAM sms: DNA repair protein RadA 97 523 IPR004504 GO:0003684|GO:0005524|GO:0006281
Ssu8g0267 537 Pfam Rubredoxin metal binding domain 102 129 IPR041166 -
Ssu8g0267 537 Gene3D - 399 524 IPR014721 -
Ssu8g0267 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 383 IPR027417 -
Ssu8g0267 537 SUPERFAMILY Ribosomal protein S5 domain 2-like 369 523 IPR020568 -
Ssu8g0267 537 Gene3D - 189 397 IPR027417 -
Ssu8g0267 537 MobiDBLite consensus disorder prediction 33 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0267 Ssu-Chr8 3969790 3988267 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0267 K04485 - gmx:100791181 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0267 8 3969790 3988267 Ssu8g0267 8 3969790 3988267 ECH
Ssu8g0267 8 3969790 3988267 Ssu4g3296 4 83097693 83107036 PCT