Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3296 atgctttctttctCCGTTTCTGGTTTCCCTTCATTCCCGCTCCGCAGGGCATATCCAAGGGTAAATGCAAGCTTTGGCATTGACCCCAATTCAACCAACCCTCATGGGCATGGCTCGGACGCTAAAGTTGAAGAAGAGTTTGGAAAGGGAAAGGGAAAGGGAAAGGGAAAGGGAAGTGGGAGAGTGATGGGGGGTGGTGGGTTTGTTATTGGAGGGAAGAAAAAGGCGAAGGAGAAGGTTCAATGGGTTTGCAGCAATTGTGGGTACAGTGCAGGGCAATGGTGGGGCGTGTGCCGATCCTGCAGTGTATCTGGCACCATGAAAGAGGCTAGATTCAGCGATGATGCTGATTATGTGATTAGTGGGTTTTCAGTTTTGGAAGATGGTGTGGGCTCTTGGCTCCCGCAGCAGGAAGGTGAGCTGCGTCCCTTGAGATTGGCAGAGGTGAAGAGGGGACTTGATCATCACCATTGGAGAATTCCTTTGTCTGGTCCGTTTGGAGATGAAGTTTCCAGAGTGCTTGGTGGTGGTCTCGTACCAGGCTCGTTGACTTTAATTGGTGGTGATCCTGGTGTTGGGAAGAGTACTCTATTGTTGCAGATAGCTGCAATTATTGCAGAAGGGCACAATGATGGTGAAGCATCTCCCGTTGTATATGTCTCTGGTGAAGAGAGTGTTGAGCAAATTGGTAACAGAGCAGATCGCCTTAGGATTGAatcagatatttatttatattcaagtAATGATGTTGAGGACATATTGAAGAAAGTTCAGTATCTCTCCCCTGGGGCTCTAATTGTTGATTCAATACAAACTGtttatttaaaaggaataatgGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGTACTTCAGCTTTACTACGATTTGCGAAGAAGACAAACATCCCGGTTCTTTTGATTGGACACGTGACAAAATCTGGGGACATAGCAGGACCTCGTGTCTTGGAGCACATTGTTGATGTCGTTTTGTATATGGAAGGTGAGAAGTACTCTTCCCATCGTATGCTTCGAGCTGTGAAAAATCGATTTGGATCCACTGATGAGCTTGGAGTCTTTGAGATTTCACATTCGGGACTTCAGGCTGTTTCAAATGCCAGTGAAATGTTTCTCAGTGAGCAGCTCCTGGATTCAGAAATTTTAGCTGGACTAGCTGTTGCTGTAATCATGGATGGGGCCCGGACATTCCTTATTGAAATTCAGGCACTTTGTCTTTCTGGTTCAGCAGGTTCAAGGCAAGTTAATGGGATCCCACTAAATAGAGCTGATATGATCATATCTGTTCTTATAAAGCAAGCAGGTCTTCGTCTCCGAGAACATGCTGTGTTTTTGAATGTTGTTAGTGGATTGACACTGTCTGAGACTGCAGGAGATCTTGCTATAGCAGCAGCAATTTGCAGCAGtTGCTTGGAAATCCCTATTCCAAATGACATTGCATTTATTGGTGAAATTGGCCTTGGTGGTGAGCTTCGCATGGTTCCTAGAATGGAGAAAAGGGTACATACCGTTGCGAAATTGGGTTTCAGAATGTGTATAGTACCAAAAGTGGCTGAAAAAGCTTTAGGAACTGAAGGTTTAGGAAAGATGGAAGTTGTTGGTTGCAGGAATCTGAAAGAAGTTATTAACACTGTATTTCCCAATATATTGAGAAGAAGCCAGTGA 1686 0.4389 MLSFSVSGFPSFPLRRAYPRVNASFGIDPNSTNPHGHGSDAKVEEEFGKGKGKGKGKGSGRVMGGGGFVIGGKKKAKEKVQWVCSNCGYSAGQWWGVCRSCSVSGTMKEARFSDDADYVISGFSVLEDGVGSWLPQQEGELRPLRLAEVKRGLDHHHWRIPLSGPFGDEVSRVLGGGLVPGSLTLIGGDPGVGKSTLLLQIAAIIAEGHNDGEASPVVYVSGEESVEQIGNRADRLRIESDIYLYSSNDVEDILKKVQYLSPGALIVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSSHRMLRAVKNRFGSTDELGVFEISHSGLQAVSNASEMFLSEQLLDSEILAGLAVAVIMDGARTFLIEIQALCLSGSAGSRQVNGIPLNRADMIISVLIKQAGLRLREHAVFLNVVSGLTLSETAGDLAIAAAICSSCLEIPIPNDIAFIGEIGLGGELRMVPRMEKRVHTVAKLGFRMCIVPKVAEKALGTEGLGKMEVVGCRNLKEVINTVFPNILRRSQ 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3296 561 MobiDBLite consensus disorder prediction 38 53 - -
Ssu4g3296 561 Pfam AAA domain 173 316 - -
Ssu4g3296 561 PANTHER DNA REPAIR PROTEIN RADA 52 553 - -
Ssu4g3296 561 TIGRFAM sms: DNA repair protein RadA 76 545 IPR004504 GO:0003684|GO:0005524|GO:0006281
Ssu4g3296 561 Gene3D - 168 370 IPR027417 -
Ssu4g3296 561 PRINTS DNA repair protein radA signature 268 292 - -
Ssu4g3296 561 PRINTS DNA repair protein radA signature 342 368 - -
Ssu4g3296 561 PRINTS DNA repair protein radA signature 84 108 - -
Ssu4g3296 561 PRINTS DNA repair protein radA signature 172 200 - -
Ssu4g3296 561 PRINTS DNA repair protein radA signature 307 335 - -
Ssu4g3296 561 PRINTS DNA repair protein radA signature 417 440 - -
Ssu4g3296 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 363 IPR027417 -
Ssu4g3296 561 PANTHER DNA REPAIR-LIKE PROTEINRADA 52 553 - -
Ssu4g3296 561 SUPERFAMILY Ribosomal protein S5 domain 2-like 349 553 IPR020568 -
Ssu4g3296 561 MobiDBLite consensus disorder prediction 25 60 - -
Ssu4g3296 561 SMART AAA_5 180 338 IPR003593 -
Ssu4g3296 561 Pfam Subunit ChlI of Mg-chelatase 435 523 - -
Ssu4g3296 561 Gene3D - 388 559 IPR014721 -
Ssu4g3296 561 Pfam Rubredoxin metal binding domain 82 109 IPR041166 -
Ssu4g3296 561 ProSiteProfiles RecA family profile 1. 159 312 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3296 Ssu-Chr4 83097693 83107036 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3296 K04485 - gmx:100794165 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3296 4 83097693 83107036 Ssu4g3296 4 83097693 83107036 ECH
Ssu8g0267 8 3969790 3988267 Ssu4g3296 4 83097693 83107036 PCT