Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0252 ATGGATTTCCGTGCCCCGCCGCCGTCTCCCGTCGCCTCTGCGCGGCGCTTGTCGCTCCCCAACGACGACGTTTTCCGCCAATTCTTGGACACCTCACTCCGTCTCCCAAACATTAACAACCTCCAACATAAACCGCCTCCCACGGTTGACTTTCGCACGTTATGGTCCGACGACGGTATCCGTCGCGTCGTTTCGGATTCTCTGGCAACTGTCGGTTGCTTTCAGCTGCTCAACCACGGGATTCCACTGGACTTGATCGCATCGCCGGCGGAAGCTGCCATCGGAATCTTCCGGGTCCCGCCGGAAAAGCGAGCAGCCGCCACGAGGTCGCCGGAGAATCCTTACGGGTTCGAGGAACAGAATGGGGAGGAGAATGAGCTGACTCAGCTGAGCGAAGAGTTCGTGTGGGGCAGAGATAACGACTTCGACCTCAAAATGGAGCGGCTTTGGCCAACAGGATAttcaaattttagTAAGAAGATGGACACTCTTCTGTCGAGGATAGAGAAGGTGGCCGAGAAAATTTTGCCAGTGATATTTGAAGATTCTCCCAAAAAATTTGCACCTGTTGACATGATTCGTGGGCATGAACGTGGGACACTGTGTTGTGTTTATAAGCACAACCCAGATAATATGCAAGGCCAATGTGCTAACTCTTTAAAGTATGATGTGATTAGGATGTTGATTAGGGGTAACGATTACTCTCATTCGTTGTGCTTGCATGTATGTGATGGGTCTTCGGAGTTTCAAGTTTACTCCAAGAAAGGTTGGCTCTCTTTCTTCCCAGAAAAAGGAGCCCTAGTAATCACCTGTGGAGACCAAACTCAGATATTAACTGATGGGCACTACAAGCACGTGATCGGAAGGCCAATGTTTAAAGTGAGAAAGAGGACAACATTTCAATGGCTTTCCTCTATTCTCTGCCAAACAACAAGAACAATTTTCAAACCAATAAGGAAAGCACTATTTCCCTGGGTTTGCAAGCCATATTGGCTATCATTCTGA 1005 0.4866 MDFRAPPPSPVASARRLSLPNDDVFRQFLDTSLRLPNINNLQHKPPPTVDFRTLWSDDGIRRVVSDSLATVGCFQLLNHGIPLDLIASPAEAAIGIFRVPPEKRAAATRSPENPYGFEEQNGEENELTQLSEEFVWGRDNDFDLKMERLWPTGYSNFSKKMDTLLSRIEKVAEKILPVIFEDSPKKFAPVDMIRGHERGTLCCVYKHNPDNMQGQCANSLKYDVIRMLIRGNDYSHSLCLHVCDGSSEFQVYSKKGWLSFFPEKGALVITCGDQTQILTDGHYKHVIGRPMFKVRKRTTFQWLSSILCQTTRTIFKPIRKALFPWVCKPYWLSF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0252 334 Gene3D - 21 312 IPR027443 -
Ssu8g0252 334 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 2 297 - -
Ssu8g0252 334 SUPERFAMILY Clavaminate synthase-like 37 290 - -
Ssu8g0252 334 PANTHER - 2 297 - -
Ssu8g0252 334 Pfam non-haem dioxygenase in morphine synthesis N-terminal 47 152 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0252 Ssu-Chr8 3703059 3705945 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0252 - - pvu:PHAVU_005G166600g 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0252 8 3703059 3705945 Ssu8g0252 8 3703059 3705945 ECH
Ssu8g0252 8 3703059 3705945 Ssu4g3317 4 83515184 83517880 PCT