Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0250 ATGGCACCCCATGGAGAGTGTTTGCCTAGCACTTTCTCTAggagcaacaacaacaacaacaacatgtcCAAACCTCCAAGGCTCTCATCTGATCACATTCAAAGAACAATCTCAGACATATCGTTTGAGCTAACCAAGGAAGGGATCGATTTGACACTTCCACCAATAAGTGAGGTTGTAGATGCCAAGTGTGAGTGCTGTGGCATGTGCGAGGAGTGCACGCCCGAGTACATAGATCGTGTGCGTGACAAGTTCTTGGGGAAGTGGGTGTGTGGTTTGTGCGCGGAGGCAGTGAAGGAAGAGTTGCAGAAAAATGGGGGGAAGAAGGAAGAGGCATTGAGTTCACACATGAATGCATGTGTTAGGTTCAACAAATATGGGAGGGCTTTCCCGGTTCTGTTCCAAGCCGAGGCCATGAAAGAGATgctgaaaaagaacaaaatggaAGGGAGAAGGGCCAAGTCCTTCAACCCAAGGGAGAAAGGAGGACAAAAGAAAGGAGGGATTGCGAGAAGTTCGAGTTGCATTCCAGCAATTCCAAGAGAGATGAATGGTCTCACAATGgccaattaa 573 0.438 MAPHGECLPSTFSRSNNNNNNMSKPPRLSSDHIQRTISDISFELTKEGIDLTLPPISEVVDAKCECCGMCEECTPEYIDRVRDKFLGKWVCGLCAEAVKEELQKNGGKKEEALSSHMNACVRFNKYGRAFPVLFQAEAMKEMLKKNKMEGRRAKSFNPREKGGQKKGGIARSSSCIPAIPREMNGLTMAN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0250 190 PANTHER CASP-LIKE PROTEIN (DUF1677) 1 187 - -
Ssu8g0250 190 MobiDBLite consensus disorder prediction 1 30 - -
Ssu8g0250 190 MobiDBLite consensus disorder prediction 149 166 - -
Ssu8g0250 190 PANTHER OS01G0745000 PROTEIN 1 187 IPR012876 -
Ssu8g0250 190 MobiDBLite consensus disorder prediction 9 30 - -
Ssu8g0250 190 MobiDBLite consensus disorder prediction 149 171 - -
Ssu8g0250 190 Pfam Protein of unknown function (DUF1677) 59 145 IPR012876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0250 Ssu-Chr8 3680003 3680575 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0250 - - gmx:100785884 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0250 8 3680003 3680575 Ssu8g0250 8 3680003 3680575 ECH
Ssu8g0250 8 3680003 3680575 Ssu4g3321 4 83571104 83571670 PCT