Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3321 atggCACCCCATGGAGAGTCCTTGGTTAGCTCTTTCTCTAGGAACAACAACATATCAAAGCCACCAAAGCTTTCATCTGAGAACCTTCAACGAACGGTCTCAGACATCTCCTTTGAGCTGACCCAACAAGAGATCGATGATTTGAAGCTGCCACCAATATCCGAGGTTGAGAATGCAAAGTGTGAGTGCTGCGGGATGTGCGAGGAGTGCACACCCGAGTACATAGACCGCGTGCGTGAAAAGTTCACTGGGAAGTGGGTGTGTGGGTTGTGTGCTGAGGCAGTGAAGGAAGAGCAGGGGAAAAATAATGGAGGGAAAATGGAGGAGGCGCTGAGTGCACACATGAGTGCATGTGTTAGGTTCAACAAATATGGGAGGGCTTTCCCAGTCCTGTTTCAAGCCCAGGCCATGAAAGAGATGCTGAAAAAGAACACTCTGGATGGAAGAAGGGCCAAGTCCATTAGCCCTAGGGACAAAGGAGTGCCAAAGAAAGGAGGGATTGCTCGTAGTACAAGTTGCATTGCAGCAATTACAAGAGAGATCAATGACATCAAAATAGTCAATTAA 567 0.4762 MAPHGESLVSSFSRNNNISKPPKLSSENLQRTVSDISFELTQQEIDDLKLPPISEVENAKCECCGMCEECTPEYIDRVREKFTGKWVCGLCAEAVKEEQGKNNGGKMEEALSAHMSACVRFNKYGRAFPVLFQAQAMKEMLKKNTLDGRRAKSISPRDKGVPKKGGIARSTSCIAAITREINDIKIVN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3321 188 MobiDBLite consensus disorder prediction 147 166 - -
Ssu4g3321 188 Pfam Protein of unknown function (DUF1677) 56 143 IPR012876 -
Ssu4g3321 188 MobiDBLite consensus disorder prediction 1 26 - -
Ssu4g3321 188 PANTHER CASP-LIKE PROTEIN (DUF1677) 1 185 - -
Ssu4g3321 188 MobiDBLite consensus disorder prediction 147 164 - -
Ssu4g3321 188 MobiDBLite consensus disorder prediction 8 26 - -
Ssu4g3321 188 PANTHER OS01G0745000 PROTEIN 1 185 IPR012876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3321 Ssu-Chr4 83571104 83571670 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3321 - - gmx:100816162 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3321 4 83571104 83571670 Ssu4g3321 4 83571104 83571670 ECH
Ssu8g0250 8 3680003 3680575 Ssu4g3321 4 83571104 83571670 PCT