Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0221 ATGGCAGTGATGTGGTTAACAGCCATGACCCCAGAGACGAGGCCTCCTCCTTGCAGCAACCCAGCTGAAACCTGCCAATCTGCAACAACAGCCCAATTGACTATCCTACTCTCTTGCTTTGCTCTCATATCCATTGGAGGCGGTGGCATCTCATGCTCCTTAGCATTTGGTGCAGATCAACTTAACCAAAAAACCAAACCCAACAATCAGAGGGTCTTAGAGAGCTTCATAAGTTGGTACATAGCTTCTCAAGCCATTGCTGTGGTATTTTCCTTGACCGGAATAGTTTACATCCAAGACCATTTTGGATGGAAAGTGGGTTTTGGGGTTCCAGCAGCACTTATGCTCGTGTCCACTTTCTTGTTCTTCCTCATTTCTCCACGTTATGTGAAGCAGAAACCACACAGCAGCTTGCTTACTGGCTTTGTTCAAGTGCTTTTTGTTGCTTATAAGAACAGAAAGCTTTCATTTCCACCTAAGGACTCCACTGGCATGTATCACCATAAGGACGACTCAACCCTTGTTGCTCCAACTGATAAACTAAGGTTTCTAAATAAAGCTTGCATCATCAAAGACAGAGAACAGGAGATAGCCTCAGATGGGTCAGCCTCAAATAAATGGAGTCTTTGCACAATAGAGCAAGTAGAAGAACTAAAGGCCATCATTAAAGTTATTCCTCTTTGGTCTACCAGTATCATGGTGTCAGTTAGCACTAGCCAAACATCATTTTGGTTACTCCAAGCTCAAACCATGAACAGACATGTCACTTCAAACTTCCAAATTCCAGCAGGTTCTTTTGGTGTATTCATAATGTTGGCAGTGTGTGTAACTGTGGGTGTCTATGATCGTGTCATCCTTCCTCTAGCTTCAAAAGTGAGAGGAAAACCAGTTACTATCAGTGCCAAAAAGAGAATAGGAATTGGACTGTTCTTCTCCATTTTGGACTTTGTGGCTTCAGCAATTGTTGAGAGTATAAGGAGGAGGAAAGCAATTAGGGAGGGATATATTGATAATCCTGAGGCAGTGTTGGACATGTCTGCAATGTGGCTTATCCCACATAATGTTTTGTGTGGTATAGGAGAAGCCTTTAATGCAATAGGCCAATCGGAGTTCTATTACTCTGAGTTTCCAAGCAGCATGTCAAGCATTGCGGCGTCCCTATTCAGCCTAGGATCTGCTGTGGGAAACTTGGTGGCTTCTCTTATAGTCAACATTGTGGATAACGTGACTTCCAGAGGGGGAAAAGAGAGTTGGGTTTCAGATAACATAAACAAGGGTCACTATGACAAGTATTACTGGCTTCTTGCCATAATGAGTGTTGTTAATATACTCTACTATTTGGTTTGTAGTTGGGCTTATGGCCCTAGTGCCGAAGAAGCCTTAAAGAAGGAGGAACGGGCGAATAGGGTTCATGATCAACAAGAAGAGGCAATGTAA 1437 0.4322 MAVMWLTAMTPETRPPPCSNPAETCQSATTAQLTILLSCFALISIGGGGISCSLAFGADQLNQKTKPNNQRVLESFISWYIASQAIAVVFSLTGIVYIQDHFGWKVGFGVPAALMLVSTFLFFLISPRYVKQKPHSSLLTGFVQVLFVAYKNRKLSFPPKDSTGMYHHKDDSTLVAPTDKLRFLNKACIIKDREQEIASDGSASNKWSLCTIEQVEELKAIIKVIPLWSTSIMVSVSTSQTSFWLLQAQTMNRHVTSNFQIPAGSFGVFIMLAVCVTVGVYDRVILPLASKVRGKPVTISAKKRIGIGLFFSILDFVASAIVESIRRRKAIREGYIDNPEAVLDMSAMWLIPHNVLCGIGEAFNAIGQSEFYYSEFPSSMSSIAASLFSLGSAVGNLVASLIVNIVDNVTSRGGKESWVSDNINKGHYDKYYWLLAIMSVVNILYYLVCSWAYGPSAEEALKKEERANRVHDQQEEAM 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0221 478 Coils Coil 457 477 - -
Ssu8g0221 478 SUPERFAMILY MFS general substrate transporter 31 451 IPR036259 -
Ssu8g0221 478 PANTHER PEPTIDE/NITRATE TRANSPORTER PLANT 1 460 - -
Ssu8g0221 478 Pfam POT family 2 419 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu8g0221 478 Gene3D MFS general substrate transporter like domains 1 461 IPR036259 -
Ssu8g0221 478 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 1 460 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0221 Ssu-Chr8 3282551 3284251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0221 1 475 Organic Solute Cotransporters AT1G52190 58.091 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0221 - K14638 gmx:100782867 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0221 8 3282551 3284251 Ssu4g3341 4 83811178 83859310 PCT