Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3341 ATGGAGGAAGTAGAGCTTTGTTCAGCTCAACCCAAAATGGCTTGCCAGCGCATTTCTCAACCCCAAAGGTGTGGTAAGGGTGGCCTCGTTACCATGCCTTTCATCATAGCAAATGAAGCACTTGCGAGGGTGGCAACGTTGGGGCTTTTGCCCAATATGATATTGTATTTGATGGGGAACTACAATCTTCATATGGCCAAAGCTACCCAGATACTCCTCTTATCAGTTGCAACCACCAACTTCATGCCTCTCCCCGGTGCCTTCATTGCTGATTCTTATCTGGGTCGCTTCCTCGCTGTTGGTTTAGGTTCCTTCATCACTTTCCTGGGAATGACACTGTTGTGGCTAACAGCCGTGATCCCACAGGCACGGCCTCCTCCTTGCAATTCTGCAACTGAAAGATGTAAACCAGCAACAGCTGGTCAAATGTCAATGTTAATATCTTCCCTTGCTCTCATGTCCATTGGAAATGGTGGCCTTTCATGTTCCCTGGCCTTTGGTGCAGATCAGGTGAATAGAAAAGATAACCCCAATAATCAAAGGGCCTTGGAGATATTCTTCAGCTGGTACTATGCTTCGTCTGCGATATCAGTCATAATTGCCTTTACTGGAATTGTATATATCCAAGATCATCTTGGATGGAAATTGGGTTTTGGAGTTCCAGCAGCACTTATGTTCTTGtccacttttttcttctttctggCTTCTCCACTTTATGTAAAGAGTAAAACACACAGCAGCTTGCTCACCGGCTTTGCACGTGTGATTGTTGTAGCCTATAAGAACAGGAAACTTCGATTACCGCATAAGATCTCGGATGGAATGTATCATCATAACAAGGACTCGGATCTTGTTGTTCCAAGTGATAAACTAAGGTTTCTGAATAAAGCTTGCTTTATTAAAGATTCAGAAAAAGATATAGCCTCTGATGGGTCAGCCTCAAATCCGTGGAGTCTCTGCACAGTTGATCAAGTAGAAGAACTAAAAGCTATTGTTAAAGTTATTCCCCTGTGGTCTACGGGGATCGTGATGTATCTTAACATTGGAGGCTCGTTTGGATTGCTGCAAGCTAAGTCCCTTAACAGACATATCATTCCAAATTTCGAAGTTCCAGCAGGTTCTTTGACCGTAATCAtgatatttacaatatttatatggATAGCTCTTTACGATCGTGTCATTATTCCTCTAGCATCAAAGCTCAGAGGCAAACCAGTTAGGATCAGTGCCAAGAGAAGAATGGGACTTGGGttgtttttctcctttctccACTTGGTAACTGCAGCAATTGTTGAGACTGCAAGGCGAAGGAGAGCAATTAGTGAGGGACATATTAATGACACACAGGTAGTGTTGAATATGTCTGCAATGTGGCTTTTTCCTCAGCTTTGCTTGGGTGGCATAGCTGAAGCATTCAATGTGATAGGCCAAAATGAGTTCTATTACACCGAGTTTCCTAAGACTATGTCGAGCATTGCTTCTTCCCTTTTTGGACTGGGAATGGCTGCAGGATACGTGGTATCTTCTTTGGTATTCAGTGTTGTGGGAAAGGTTACTTCAAGAGGGGGAAAGGATGGATGGGTTTCAGATAACATTAACAAGGGTCGTTTCGACAAGTACTACTGGCTTCTTGCCGCACTTAGTGCTGTTAATATACTGTATTATCTAGTATGCAGTTGGGCTTATGGATCTACTGCTGATCAAGAATCAAAGGCAACTGAAGAAAATGGTTCAAATGAGGAAGAATTACCATTAATTGAATCCAGGACTGATGGTCCGTTTGATAAGGTATCCCAGGTTACAAATGAAGCACTTGCAAGCGTGGCAAAATTTGGTCTTCATCCAAACATGATACTGTATTTGATGGGGAGTTACAAGTTTCACTTAGCCAAGGCAACCCAAGTGCTCCTGCTATCCTCCGCAATAGGCCATTTCACACCACTCATTGCTGCTTTCATTGCTGATTCTTACCTGGGTCGATTCCTCACTGGAATGACAATGTTGTGGCTAACGGCCATGATCCCACAGGCTCGGCCTCCTCCTTGCAACCCTGCAACTGAAAGATGTAAACCAGCAACATCTGGGCAAATGGCAATGTTAATCTCTTCCCTTGCTCTCATGTCTATTGGAAATGGTGGCCTTTCATGCTCCATGCCATTTGGGGCAGACCAGGTGAACAAAAAAGATAACCCCAACAATCAGAGGGCCTTGGAAATATTCTTCAGCTGGTATTATGCTTCAACAGCTGTTTCTGTTATAATTGCTCTCACGGTAATAGTATATATCCAAGATCATCTTGGATGGAAAGTAGGTTTTGGAGTTCCAGCAGCACTTATGCTCTTgtctactttctttttctttcttgcttCTCCACTTTATGTAAAGAACAAAGTACAAGACAGCTTGATCACTGGCTTTGCACGAGTGATCGCCGTGGCCTATAAGAATAGGAAACTTCCTTTACCACCTAGGAACTCAGTTGGAATGTACCATCGTAAGAAGGACTCTGATCATGTTGTTCCTACTAATAACCTAAGGTTTCTGAACAAGGCTTGCATCATTAAAGATGTAGAAAATGATATTGCCTCTGATGGATCAGCCTCAAATCCGTGGAGTCTGTGCACAATAGATCAAGTGGAAGAACTAAAAGCTATTATTAAGGTTATTCCCCTGTGGTCTACGGGGATCATGATGTCACTTAACATTGGAGGCTCGTTTGGAATATTACAAGCTAAAGCCCTCAACAGACATATCACTTCACACTTCGAATTTCCAGCAGGTTCTTTTGCCGTAGTCGTGGTACTCACAATATTTATATGGGTGGCTCTTTATGATCGTGTCATTATTCCTCTAGCATCAAAGCTCAGAGGTAAACCGGTTAGGATCAGTGCCAAGAGAAGAATGGGAATTGGGTtggttttctcttttctccacTTGGTAACTGCAGCAATTGTCGAGACAAGAAGGCGAAGGAAAGCAATCAGGGAGGGACATATTAATGACGCCCATGCTGTGTTGAATATGTCTGCAGTGTGGCTTGTTCCTCAACTTTGCTTGGGTGGCATGGCTGAAGCATTCAATGCAATAGGCCAAAACGAGTTCTATTACACTGAGTTTCCTAAAACTATGTCAAGTATTGCTTCTTCCCTTTTTGGACTTGGAATGGCTGCAGGAAACGTGTTATCTAGTTTGGTATTCAACGTTGTGGAAAAGGTTACTCTAAGAGGAGGAAAGGAGGGATGGGTTTCAGATAACATTAACAAGGGTCGTTACGACAAGTACTACTGGGTTCTTGCCTCAATGAGTGCTgttaatatattgtattatcTAGTATGCAGTTGGGCTTACGGGCACACGGCTGATCAAGTATCCAAGGTATCTGACGAAAACAAGGAAGTGGAGCTTTGTTCAAGTGAAGTGGAAATGGCTTCTCAACACATTCCAGAGCCACAAAGGAAAAAGGGTGGTATTGTTACCATGCCTTTCATCATAGCAAATGAAGCACTTGCAAGGGTGGCAACAATTGGTCTTCTGCCGAACATGATATTGTATTTGATGGGGAGTTACAAGTTTCATTTAGCCAAAGCAACCCAAGTGCTTCTGTTATCCTCCGCAACAAGCAATCTGACACCACTCATCGGTGCCTTCATTGCTGATTCTTGCCTGGGTCGATTCCTCGCTGTTGGGTTGGGTTCCACCGTCACTTTCCTGGGAATGGCACTTTTGTGGCTAACGGCCATGATCCCACAGGCTCGGCCTCCTCCTTGCAACCCTACAACTGAAAGTTGTAAATCAGCAACAGCTGGGCAAATGACAATACCAGGTGAGCAGAAAGATAACCCCAACAATCAGAGGGCCTTAGAAATATTCTTCAGCTGGTATTATGCTTCAACAGCTGTTTCTGTTATAATTGCTCTCACGGTAATAGTATATATCCAAGATCATCTTGGATGGAAAGTAGGTTTTGGAGTTCCAGCAGCAGTTATGCTCTTgtctactttctttttctttcttgcttCTCCActttatgtaaagaataaaatacaaGGCAGCTTGATCACTGGCTTTGCACAAGTAATTGTTGTGGTCTATAAGAACAGGAAGCTTCCTTTACCACCCAGGAACTCGGTTGGAATGTACCATCGTAAGAGGGACTCTTATCTTGTTGTTCCTACTGATAAACTAAGGTTTCTGAATAAAGCCTGCATCATTAGAGATCCAGAAAAAGATAAAGCCTCTGATAGATCAGCCTCAAATCCGTGGAGTCTCTGCACAATAGATCAAGTGGAAGAActaaaagctatttttaaagttattccCCTGTGGTCTACGGGGATCATGGTGTCACTTAACATTGGAGGCTCGTTTGGAATATTACAAGCTAAATCCCTCAAAAGACATATCACTCCACACTTTGAATTTCCAGCAGGTTCTTTTGCCGTAGTCATGGTACTTACAATATTTATATGGGTGGCTCTTTATGATCGTGTCATTATTCCTCTAGCATCAAAGCTCAGAGGCAAGCCGGTTAGGATCAGTGCCAAGAGAAGAATGGGAATTGGGTtggttttctcttttctccacTTGGTAACTGCGGCAATTGTCGAGACAAGAAGGCGAAGGAAAGCAATCAGGGAGGGACATATTAATGACGCCCATGCAGTGTTGAATATGTCTGCAATGTGGCTTGTTCCTCAACTTTGCTTGGGTGGCATGGCCGAAGCATTCAATGCCATAGGCCAAAACGAGTTCTATTACACTGAGTTTCCTAGAACTATGTCAGGTATTGCTTCTTCCCTTTTTGGACTCGGAATGGCTGCAGGAAACGTGTTATCCAGTTTGGTATTCAGCATTGTGGAAAAGATTACTTCAAGAGGAGGAAAGGAGGGATGGGTTTTAGATAATATTAACAAGGGTCGTTATGACAAGTACTACTGGGTTCTTGCTTCACTGAGCGCTGTTAATATACTGTATTATCTAGTATGCAGTTGGGCTTATGGACCCACGGCTGATCAAGTATCCAAGGTATCTGACGAAAATGGTTCAAATGAAGAAGCATTAACTCAATTGGACAATATGAGTCAGGTTGACAAGGCATCCCTTGTTGGTGAAGAAAGTGGCCCAAATGAGAAAAGAGTTGACTAG 5145 0.4173 MEEVELCSAQPKMACQRISQPQRCGKGGLVTMPFIIANEALARVATLGLLPNMILYLMGNYNLHMAKATQILLLSVATTNFMPLPGAFIADSYLGRFLAVGLGSFITFLGMTLLWLTAVIPQARPPPCNSATERCKPATAGQMSMLISSLALMSIGNGGLSCSLAFGADQVNRKDNPNNQRALEIFFSWYYASSAISVIIAFTGIVYIQDHLGWKLGFGVPAALMFLSTFFFFLASPLYVKSKTHSSLLTGFARVIVVAYKNRKLRLPHKISDGMYHHNKDSDLVVPSDKLRFLNKACFIKDSEKDIASDGSASNPWSLCTVDQVEELKAIVKVIPLWSTGIVMYLNIGGSFGLLQAKSLNRHIIPNFEVPAGSLTVIMIFTIFIWIALYDRVIIPLASKLRGKPVRISAKRRMGLGLFFSFLHLVTAAIVETARRRRAISEGHINDTQVVLNMSAMWLFPQLCLGGIAEAFNVIGQNEFYYTEFPKTMSSIASSLFGLGMAAGYVVSSLVFSVVGKVTSRGGKDGWVSDNINKGRFDKYYWLLAALSAVNILYYLVCSWAYGSTADQESKATEENGSNEEELPLIESRTDGPFDKVSQVTNEALASVAKFGLHPNMILYLMGSYKFHLAKATQVLLLSSAIGHFTPLIAAFIADSYLGRFLTGMTMLWLTAMIPQARPPPCNPATERCKPATSGQMAMLISSLALMSIGNGGLSCSMPFGADQVNKKDNPNNQRALEIFFSWYYASTAVSVIIALTVIVYIQDHLGWKVGFGVPAALMLLSTFFFFLASPLYVKNKVQDSLITGFARVIAVAYKNRKLPLPPRNSVGMYHRKKDSDHVVPTNNLRFLNKACIIKDVENDIASDGSASNPWSLCTIDQVEELKAIIKVIPLWSTGIMMSLNIGGSFGILQAKALNRHITSHFEFPAGSFAVVVVLTIFIWVALYDRVIIPLASKLRGKPVRISAKRRMGIGLVFSFLHLVTAAIVETRRRRKAIREGHINDAHAVLNMSAVWLVPQLCLGGMAEAFNAIGQNEFYYTEFPKTMSSIASSLFGLGMAAGNVLSSLVFNVVEKVTLRGGKEGWVSDNINKGRYDKYYWVLASMSAVNILYYLVCSWAYGHTADQVSKVSDENKEVELCSSEVEMASQHIPEPQRKKGGIVTMPFIIANEALARVATIGLLPNMILYLMGSYKFHLAKATQVLLLSSATSNLTPLIGAFIADSCLGRFLAVGLGSTVTFLGMALLWLTAMIPQARPPPCNPTTESCKSATAGQMTIPGEQKDNPNNQRALEIFFSWYYASTAVSVIIALTVIVYIQDHLGWKVGFGVPAAVMLLSTFFFFLASPLYVKNKIQGSLITGFAQVIVVVYKNRKLPLPPRNSVGMYHRKRDSYLVVPTDKLRFLNKACIIRDPEKDKASDRSASNPWSLCTIDQVEELKAIFKVIPLWSTGIMVSLNIGGSFGILQAKSLKRHITPHFEFPAGSFAVVMVLTIFIWVALYDRVIIPLASKLRGKPVRISAKRRMGIGLVFSFLHLVTAAIVETRRRRKAIREGHINDAHAVLNMSAMWLVPQLCLGGMAEAFNAIGQNEFYYTEFPRTMSGIASSLFGLGMAAGNVLSSLVFSIVEKITSRGGKEGWVLDNINKGRYDKYYWVLASLSAVNILYYLVCSWAYGPTADQVSKVSDENGSNEEALTQLDNMSQVDKASLVGEESGPNEKRVD 1714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3341 1714 CDD MFS_NPF1_2 32 562 - -
Ssu4g3341 1714 PANTHER PEPTIDE/NITRATE TRANSPORTER 1143 1273 - -
Ssu4g3341 1714 CDD MFS_NPF1_2 600 1116 - -
Ssu4g3341 1714 Gene3D MFS general substrate transporter like domains 1127 1675 IPR036259 -
Ssu4g3341 1714 MobiDBLite consensus disorder prediction 1695 1714 - -
Ssu4g3341 1714 Gene3D MFS general substrate transporter like domains 569 1126 IPR036259 -
Ssu4g3341 1714 CDD MFS_NPF1_2 1160 1666 - -
Ssu4g3341 1714 Pfam POT family 1282 1632 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g3341 1714 Pfam POT family 662 1082 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g3341 1714 Pfam POT family 99 528 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g3341 1714 SUPERFAMILY MFS general substrate transporter 694 1116 IPR036259 -
Ssu4g3341 1714 Gene3D MFS general substrate transporter like domains 9 568 IPR036259 -
Ssu4g3341 1714 SUPERFAMILY MFS general substrate transporter 47 559 IPR036259 -
Ssu4g3341 1714 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 19 579 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g3341 1714 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 599 1131 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g3341 1714 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 86 110 IPR018456 GO:0006857|GO:0016020|GO:0022857
Ssu4g3341 1714 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 1143 1273 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g3341 1714 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 1277 1684 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu4g3341 1714 PANTHER PEPTIDE/NITRATE TRANSPORTER 599 1131 - -
Ssu4g3341 1714 SUPERFAMILY MFS general substrate transporter 1289 1663 IPR036259 -
Ssu4g3341 1714 PANTHER PEPTIDE/NITRATE TRANSPORTER 19 579 - -
Ssu4g3341 1714 PANTHER PEPTIDE/NITRATE TRANSPORTER 1277 1684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3341 Ssu-Chr4 83811178 83859310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3341 26 582 Organic Solute Cotransporters AT1G52190 57.168 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3341 - K14638 gmx:100804235 1105.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0221 8 3282551 3284251 Ssu4g3341 4 83811178 83859310 PCT