Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0182 ATGCAAGTAACATTTAATCCCAAAGACACAAACACCTTTGCTAGTGCATCTCTTGATCGGACCATTAAGATTTGGAATCTTGGCTCTCCTGATCCTAATTTTACGTTGGATGCCCATCAGAAAGGAGTGAATTGTGTTGATTATTTTACAGGTGGTGACAAACCGTACCTAATCACTGGTTCTGATGATCACACTGCGAagGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACCCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGTACAGTACGCATATGGCATTCAACAACTTATAGGCTTGAGAACACATTAAACTATGGTCTTGAAAGAGTCTGGGCTATTGGATACTTGAAGGGTTCACGTCGGGTTGTGATTGGCTATGATGAAGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCTGTGGCTAGCATGGACAACAGCGGGAAAATTATTTGGGCTAAGCATAATGAAATTCagactgtcaatataaaaagtgtaGGAGCAGATGTAGAGGTTGCTGATGGAGAAAGGTTACCTTTAGCTGTTAAGGAGTTGGGCACCTGTGATCTCTACCCCCAAAATTTAAAGCACAATCCAAATGGGAGGTTTGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACTGCATTGGCATGGAGAAATAGGTCATTTGGTTCAGCATTGGAATTTGTCTGGTCTTCTGAGGGAGAATATGCTGTCAAAGAAAGTACatcaaagattaaaattttcagCAAAAATTTCCAgGAAAAGAGGAGTGTCCGACCAACATTTTCAGCTGAAAGAATATTTGGTGGCACTTTACTGGCAATGTGCTCCAACGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAACGTGAAAAACCTCTACTGGGCTGACAGTGGTGATCTAGTAACAATTGCTAGTGATACATCTTTCTACATTCTGAAGTACAATCGTGATGTTGTTGTATCACATTTAGATAGTGGAAGACCTGTAGAAGAGGAAGGTGTTGAAGATGCTTTTGAGCTCTTACATGAAATGAATGAGCGTGTCAGGACAGGCATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAGGTAACAACAATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAATGTTATGGGATACACACTGCTTTTAAGCTTGATCGAGTACAAGACACTTGTGATGCGTGGTGATTTGGAAAGGGCCAATGAAATTCTACCATCAATCCCTAAAGAGCATCATAACAGTGTGGCTCATTTCCTGGAATCACGAGGGATGATAGAAGATGCTCTTGAAGTAGCTACTGACCCTGACTACAGATTTGATCTAGCGATACAGCTTGGAAAACTAGATGTTGCAAAGAGTATTGCAATAGAATTGCAGAGTGAATCTAAATGGAAGCAGTTGGGAGAATTAGCTATGTCTACTGGAAAGTTAGAAATGGCCGAGGAATGTTTAAAGCATGCAATGGATTTGAGTGGGTTGTTACTGCTATATTCTTCTCTAGGAGATGCTGAAGGAATATCAAAACTTGCAATCCTTGCTAAGGAACAAGGGAAGAACAATGTTGCATTCCTTTGCTTATTTATGTTGGGTAAATTAGAAGACTGCCTTCAACTGTTGGTAGAAAGTAATCGAATTCCAGAGGCAGCTTTGATGGCTCGATCTTATCTCCCAAGTAAGGTCTCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAATAAGgTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAAGAATatccaaatttgtttgaagacTGGCAAGTTGCACTTGCTGTCGAATCTAAAGCTGCAGAAACAAGGAATGTGTACCCTCCTGCAGACCAGTACATCAACCACGCTGACAAATCACACATTACCCTTGTTGAAGCTTTCAGAAACATGCAGATTGAGGAAGGAGAGGAGCATCTGGAGAATGGGGACTCTACTCATGAGGTATTCTAA 2154 0.3979 MQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSVGADVEVADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSEGEYAVKESTSKIKIFSKNFQEKRSVRPTFSAERIFGGTLLAMCSNDFICFYDWAECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVVSHLDSGRPVEEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAHFLESRGMIEDALEVATDPDYRFDLAIQLGKLDVAKSIAIELQSESKWKQLGELAMSTGKLEMAEECLKHAMDLSGLLLLYSSLGDAEGISKLAILAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVESKAAETRNVYPPADQYINHADKSHITLVEAFRNMQIEEGEEHLENGDSTHEVF 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0182 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1 27 - -
Ssu8g0182 717 PRINTS G protein beta WD-40 repeat signature 99 113 IPR020472 -
Ssu8g0182 717 PRINTS G protein beta WD-40 repeat signature 13 27 IPR020472 -
Ssu8g0182 717 PRINTS G protein beta WD-40 repeat signature 57 71 IPR020472 -
Ssu8g0182 717 Pfam Coatomer WD associated region 174 618 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Ssu8g0182 717 Gene3D - 445 653 - -
Ssu8g0182 717 SMART WD40_4 29 70 IPR001680 GO:0005515
Ssu8g0182 717 SMART WD40_4 1 26 IPR001680 GO:0005515
Ssu8g0182 717 SMART WD40_4 73 112 IPR001680 GO:0005515
Ssu8g0182 717 Pfam WD domain, G-beta repeat 75 111 IPR001680 GO:0005515
Ssu8g0182 717 Pfam WD domain, G-beta repeat 32 70 IPR001680 GO:0005515
Ssu8g0182 717 Gene3D - 1 155 IPR015943 GO:0005515
Ssu8g0182 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 36 73 - -
Ssu8g0182 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 36 79 IPR001680 GO:0005515
Ssu8g0182 717 PANTHER COATOMER 1 713 - -
Ssu8g0182 717 SUPERFAMILY WD40 repeat-like 3 356 IPR036322 GO:0005515
Ssu8g0182 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 1 35 IPR001680 GO:0005515
Ssu8g0182 717 ProSiteProfiles Trp-Asp (WD) repeats profile. 80 121 IPR001680 GO:0005515
Ssu8g0182 717 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 80 111 - -
Ssu8g0182 717 PANTHER COATOMER SUBUNIT BETA' 1 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0182 Ssu-Chr8 2721401 2727660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0182 13 147 Miscellaneous Gene Families AT5G08390 28.148 1.25e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0182 K17302 - gmx:100815780 1425.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0182 8 2721401 2727660 Ssu8g0182 8 2721401 2727660 ECH
Ssu8g0182 8 2721401 2727660 Ssu4g3382 4 84219743 84230099 PCT