Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3382 ATGCCTCTCAGACTCGAAATCAAGAGAAAGCTTGCACAAAGATCAGAGAGAGTAAAGTCTGTGGATCTACATCCAACAGAACCATGGATTCTAGCAAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAATCACAGacCATGGCCAAGTCTTTTGAGGTTACTGAGTTACCAGGTGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTGTCTGCTGTATGCTTTCATCCTGAACTGCCTATAATCATTACTGGCTCTGAGGATGGCACAGTGCGCATTTGGCATTCAACAACTTATAGGCTTGAAAACACATTGAACTATGGTCTTGAAAGAGTTTGGGCTATTGGATACCTGAAGGGTTCACGTCGGGTTGTGATAGGCTATGATGAAGGTACTATTATGGTCAAACTTGGTCGAGAAGAACCTGTAGCCAGCATGGATAACAGTGGAAAAATCATTTGGTCTAAGCATAATGAAATTCAAACTGTCAATATAAGGAGTGTAGGAGCAGATGTGGAGATTGCTGATGGAGAAAGGTTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCACAAAGTTTAAGGCACAATCCAAATGGGaggtttgttgttgtttgtggagATGGGGAGTATATTATATACACTGCTTTGGCATGGAGAAATAGATCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCAGATGGGGAGTATGCTGTAAGAGAAAGTACATCGAAGATCAAAATTTTCAGTAAAAATTTCCAGGAAAAGAAGAGTATCCGACCGACATTTTCGGCTGAACGAATATTTGGTGGCACTGTATTGGCAATTTGCTCAAATGATTTCATCTGCTTTTACGACTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAAACCTCTACTGGGCTGATAGTGGTGATCTAGTGACAATTGCTAGTGATACATCATTCTACATCCTGAAGTACAATCGTGATGTTGTTGCATCATATTTAGATAGTGGAAGCCCAGTTGATGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTTCATGAAATGAATGAACGTGTCAGGACAGGGATCTGGGTTGGGGATTGTTTTATCTACAACAATTCTTCTTGGAGGCTTAACTATTGTGTTGGTGGTGAGGTAACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAGGGTCTATTTGATAGACAAAGAATTCAATGTTATGGGATACACACTACTTTTAAGCTTGATTGAGTACAAGACTCTTGTCATGCGTGGGGATTTGGAAAGGGCCAATGAAATTCTACCATCAATTCCTAAAGAGCATCATAACAGtgTGGCTCGTTTCCTGGAATCACGAGGGATGATAGAGGATGCTCTTGAAATAGCTACTGACCCTGATTACAGGTTTGATCTAGCCATACTGCTTGGAAGATTAGAGGTTGCCAAGGGTATTGCCACTGAAGTGCAGAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCTATGTCTATTGGAAAGTTAGAAATGGCTGAGGAGTGTTTAAAACACGCAATGGATTTGAGTGGGTTATTGCTTCTATATTCTTCTTTAGGAGATGCTGAAGGAATATCAAAACTTGCAACTCTTGCTAAAGAGCAAGGGAAGAATAATGTTGCATTCCTTTGCTTATTCATGTTGGGTAAACTTGAGGACTGCCTTCATCTGTTGGTAGAAAGCAATCGGATTCCAGAGGCTGCTTTAATGGCTCGATCCTATCTCCCAAGCAAGGTCTCAGAGGTAGTGGCAATTTGGAGAAAAGATCTCAGTAAGGTTAATCCAAAAGCTGCCGAATCATTGGCTGATCCTGAGGAGTATCCTAATTTGTTTGATGATTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCTGCAGAAACAAGGGGTGTTTACCCTCCTGCATCGGAGTATGTCAGCCAGGCTGATAAATCACATATCACCCTTGTTGAAGCTTTCAGAAACATGCAGATAGAAGAAGGGGATCAGCCTCTTGAGAATGGGGATTCTAACCGTGAGTTGACTGAACAAAATGGAGAAGAGCACTATACAGAGGAACAAAATGGAGAGGAAGGAAGCCAAGAGGAGGCAGTTGTAGTGGATGCCGATTCTACTGATGGTGCAGTCCTCATTAATGGTAATGAGGCCGATGAAGAGTAG 2265 0.4146 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPGVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWSKHNEIQTVNIRSVGADVEIADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSKIKIFSKNFQEKKSIRPTFSAERIFGGTVLAICSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVASYLDSGSPVDEQGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEDALEIATDPDYRFDLAILLGRLEVAKGIATEVQSESKWKQLGELAMSIGKLEMAEECLKHAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVAFLCLFMLGKLEDCLHLLVESNRIPEAALMARSYLPSKVSEVVAIWRKDLSKVNPKAAESLADPEEYPNLFDDWQVALAVESKAAETRGVYPPASEYVSQADKSHITLVEAFRNMQIEEGDQPLENGDSNRELTEQNGEEHYTEEQNGEEGSQEEAVVVDADSTDGAVLINGNEADEE 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3382 754 PANTHER COATOMER SUBUNIT BETA' 1 59 - -
Ssu4g3382 754 SMART WD40_4 66 105 IPR001680 GO:0005515
Ssu4g3382 754 SMART WD40_4 4 43 IPR001680 GO:0005515
Ssu4g3382 754 Gene3D - 61 148 IPR015943 GO:0005515
Ssu4g3382 754 Gene3D - 11 60 IPR015943 GO:0005515
Ssu4g3382 754 MobiDBLite consensus disorder prediction 700 724 - -
Ssu4g3382 754 PANTHER COATOMER SUBUNIT BETA' 61 720 - -
Ssu4g3382 754 ProSiteProfiles Trp-Asp (WD) repeats profile. 73 114 IPR001680 GO:0005515
Ssu4g3382 754 SUPERFAMILY WD40 repeat-like 6 331 IPR036322 GO:0005515
Ssu4g3382 754 PIRSF Beta'-COP 2 60 IPR016453 -
Ssu4g3382 754 PIRSF Beta'-COP 60 738 IPR016453 -
Ssu4g3382 754 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 73 104 - -
Ssu4g3382 754 Pfam Coatomer WD associated region 167 611 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Ssu4g3382 754 Gene3D - 438 646 - -
Ssu4g3382 754 PANTHER COATOMER 1 59 - -
Ssu4g3382 754 MobiDBLite consensus disorder prediction 694 754 - -
Ssu4g3382 754 PANTHER COATOMER 61 720 - -
Ssu4g3382 754 Pfam WD domain, G-beta repeat 68 104 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3382 Ssu-Chr4 84219743 84230099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3382 15 111 Miscellaneous Gene Families AT5G08390 25.210 1.05e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3382 K17302 - gmx:100818132 1343.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3382 4 84219743 84230099 Ssu4g3382 4 84219743 84230099 ECH
Ssu8g0182 8 2721401 2727660 Ssu4g3382 4 84219743 84230099 PCT