Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0179 ATGCGTGGTGGAAGGAGACTGTGGGAGTCTAAGGATAACAGGAAGTGGGGACATGATAAGTTTGAGGAAATTACTTTGCAGGAGAGGCACTACAAAGAGGGAAGGAGACCTTCTAAGGGTAATTATCGAGGCCGTGGTGGTAAAACTCGAGGTGTTGATCATGGAGGGTATGTTCGAGGTAACAGAAAAGAATATGATAACAGAGGCAATCAAACTCAGGCACCAAAGAGTGTTGTGCGAGGGAGAGGACCCCGGAGGTACGAGCCTACTAATAAAAGCAATGATTCAGCATCCCAGGTGCAAATTAAACAaTATGGGAAGCAGCCAGAGAAAACTTCACATGCTAGTCCAGGGAAAACTTTCCTCCTGTCTCTAATTCAGAGCCTGATCCTGTGCCTGCTAAGAAACAAGTGTTTGcatcaaatttga 429 0.4476 MRGGRRLWESKDNRKWGHDKFEEITLQERHYKEGRRPSKGNYRGRGGKTRGVDHGGYVRGNRKEYDNRGNQTQAPKSVVRGRGPRRYEPTNKSNDSASQVQIKQYGKQPEKTSHASPGKTFLLSLIQSLILCLLRNKCLHQI 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0179 142 PANTHER PROTEIN MLN51 HOMOLOG 1 121 IPR044796 GO:0003729|GO:0006397|GO:0035145
Ssu8g0179 142 MobiDBLite consensus disorder prediction 27 66 - -
Ssu8g0179 142 Pfam CASC3/Barentsz eIF4AIII binding 4 47 IPR018545 GO:0003729|GO:0006397|GO:0035145
Ssu8g0179 142 PANTHER PROTEIN MLN51 HOMOLOG 1 121 - -
Ssu8g0179 142 MobiDBLite consensus disorder prediction 90 116 - -
Ssu8g0179 142 MobiDBLite consensus disorder prediction 27 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0179 Ssu-Chr8 2704105 2704729 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0179 - - gmx:100779103 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0179 8 2704105 2704729 Ssu4g3383 4 84233618 84237351 PCT