Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3383 ATGGCTAGCGCGgttgaagaaaataatgttGAGTACGATAGTGATCCAGAAGAGGCAAAGAGACCTTTAACAATGCGGAGGCGTGAAGCAAGCGATGACGAAGAAGCCGAGGGAGAAGTCACTCAGAAGAGGGAAGATGGTAGGGTAGAGGTTCGTTCTGATGATTTAGATGACGAAGGAGGTGTTGAAGACTATGATGATGATgctattgaagaagaagaagaagaagaggaagtgGAGGAAGAAGTTGAAGAAGAGGTATACGAGGAGAAGGGTGCAAGTGGTGGGGTTGAGAGTTCAGAGGTTGTGGTTAATGAATCTGATGGTGATGTCAGACCCCCTTTGGAAGATTCTGTTGAGGACCATTCAGAGGAGAAAAAGGAGAATGAACCATTTGCGGTGCCCACTGCTGGAGCTTTTTACATGCACGACGACCGTTTTAGGGACATTGCTGGTGCCCGCCACAGGCGGATACAGGGTGGAAGGAGACTGTGGGAGTCCAAAGATGACAGAAAATGGGGACATGATAAATTTGAGGAAATTACTTTGCATGAAAGGCACTATGAAGAGAGGAGGAGACCTTCTAGGGGTAATTATCGTGGCCATGCTAAAAGTCGAGGCACTGATCGTGGAGGATATGTTCGAGGAAGCAGGAAAGGTTATAATAACAGTAGCAATCAAAATCAGGTGCCTAAGAGTGTTGTGAGAGGGACAGGCCCCCAAAGGTATGAACGTACCAATAAAAGCAATGGTCCATCTCCCTACGTGCAAAATAAACAATCTGGGAAGTCTCTTGAGAAAACTTCAAATGTTAGTTTGGAGAGGACTTTCACACCTGCTTCCAATGCAGAATCTGACCCTGTGCCTGCTAAAAATCAAGTGacttcaaatttgaattcaGCATCCCCTCCATTTTACCCATCAGGCTCTTCCAACAACGATACTAATTTGGCACAAAAAAGGGAGGTACAAACGGGTGGCAGTAGCAGGAATGCTGGCCATGTTATGGATGAGGGTTTTCCGGTTCAACAAAACAATGCACTGCCTCGGGGAAAGAACATTGTTGATTCCATCAGCTTGGCAAAGCTGTATATTGATGAGTCCATTCCTCCATCTGTTGGAAAGCCTTTGAGCAATGTGCATATGGCACCACCTGGATCTTCTGGAGTCAATGCTTCTCAATCTCCTCATCTCAGGGCTTCTGGGAATGGGAGGGGTGTAGCAAAGCCAGTACAGATGAATTATCGGCGTGCTTCATCACATAATAAAGTTCCTCCAACACAACTGGCTATTCAGACAAGTTCTGTTCCAGGAAGGAATTCAACTTCTGTGCAAGCTACTGTCCCACAGTTGGGCCATAGACCTGGTAGTGGGTCTCAATCATCATCTCCCCCCAAAACATCCACGTCAATTAATTCACATGATTCTGGAGAAATGGATGCAGCATCAGAATCAGGTAAAGCCAAAGGTGCTTTGGTTGGGAAGGGAAGGGGAGGTTCCCATGGTGCAGGAAGGGGATCTTTTGTTTATGGTGGGGCACAGGTAATGGGTGCTGCTGGAAATGTGAGTGTTAGTCATGGAGATTCAAATGCCTCAGCCACTCCAGCCTTCTTGCCAGTCATGCAATTTGGAGGCCAGCATCCTGGTGGTATAGGAGTTCCTGCTGTTGGCATGGCATTCCCTGGATATGTTGCTCAGCCTCAACTTGGTTTGGGAAAGTCAGAAATGACATGGTTACCAGTCTTGGCTGGTGCTGCAGGAGCTTTAGGGGCTACATACTGTTCCCCATACCTTGCTGTTGATGGTGCATACACTCGACAATCTGGACAGGCCTCTGCGATGGATACTTCAAGCAAGGaacataatgttaataaagCTAACAATGAATTGAAGCCACCGCAGAGATCTGAGCATGCAAGTGATGAGCTCGGACAACGGCAAAATAAACCCCGAAGATATTCAGAGATGAATTTTGGTCAGTGA 1983 0.4528 MASAVEENNVEYDSDPEEAKRPLTMRRREASDDEEAEGEVTQKREDGRVEVRSDDLDDEGGVEDYDDDAIEEEEEEEEVEEEVEEEVYEEKGASGGVESSEVVVNESDGDVRPPLEDSVEDHSEEKKENEPFAVPTAGAFYMHDDRFRDIAGARHRRIQGGRRLWESKDDRKWGHDKFEEITLHERHYEERRRPSRGNYRGHAKSRGTDRGGYVRGSRKGYNNSSNQNQVPKSVVRGTGPQRYERTNKSNGPSPYVQNKQSGKSLEKTSNVSLERTFTPASNAESDPVPAKNQVTSNLNSASPPFYPSGSSNNDTNLAQKREVQTGGSSRNAGHVMDEGFPVQQNNALPRGKNIVDSISLAKLYIDESIPPSVGKPLSNVHMAPPGSSGVNASQSPHLRASGNGRGVAKPVQMNYRRASSHNKVPPTQLAIQTSSVPGRNSTSVQATVPQLGHRPGSGSQSSSPPKTSTSINSHDSGEMDAASESGKAKGALVGKGRGGSHGAGRGSFVYGGAQVMGAAGNVSVSHGDSNASATPAFLPVMQFGGQHPGGIGVPAVGMAFPGYVAQPQLGLGKSEMTWLPVLAGAAGALGATYCSPYLAVDGAYTRQSGQASAMDTSSKEHNVNKANNELKPPQRSEHASDELGQRQNKPRRYSEMNFGQ 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3383 660 MobiDBLite consensus disorder prediction 433 500 - -
Ssu4g3383 660 MobiDBLite consensus disorder prediction 371 407 - -
Ssu4g3383 660 MobiDBLite consensus disorder prediction 175 213 - -
Ssu4g3383 660 PANTHER PROTEIN MLN51 HOMOLOG 1 660 - -
Ssu4g3383 660 Coils Coil 62 91 - -
Ssu4g3383 660 MobiDBLite consensus disorder prediction 218 315 - -
Ssu4g3383 660 MobiDBLite consensus disorder prediction 622 649 - -
Ssu4g3383 660 MobiDBLite consensus disorder prediction 56 88 - -
Ssu4g3383 660 Pfam CASC3/Barentsz eIF4AIII binding 120 203 IPR018545 GO:0003729|GO:0006397|GO:0035145
Ssu4g3383 660 MobiDBLite consensus disorder prediction 384 400 - -
Ssu4g3383 660 MobiDBLite consensus disorder prediction 1 137 - -
Ssu4g3383 660 SMART Btz_2 86 205 IPR018545 GO:0003729|GO:0006397|GO:0035145
Ssu4g3383 660 MobiDBLite consensus disorder prediction 611 660 - -
Ssu4g3383 660 MobiDBLite consensus disorder prediction 110 131 - -
Ssu4g3383 660 MobiDBLite consensus disorder prediction 433 479 - -
Ssu4g3383 660 MobiDBLite consensus disorder prediction 175 315 - -
Ssu4g3383 660 PANTHER PROTEIN MLN51 HOMOLOG 1 660 IPR044796 GO:0003729|GO:0006397|GO:0035145
Ssu4g3383 660 MobiDBLite consensus disorder prediction 14 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3383 Ssu-Chr4 84233618 84237351 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3383 - - gmx:100792594 879.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3383 4 84233618 84237351 Ssu4g3383 4 84233618 84237351 ECH
Ssu8g0179 8 2704105 2704729 Ssu4g3383 4 84233618 84237351 PCT