Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0175 ATGGAGTTGATTTCAGGTCTACCAGAGGACGTAGCCCGAGACTGTTTAATTCGGGTACCGTACCAGCAATTCCCGGCGGTAGCCTCCGTCTGCAAAGGGTGGAACACGGAGATTCACTCGCCGGAGTTTCACCGGCGGAGGAAGACCACGAAACACGCCCAGAAAATCCTCGTCACGGTTCAATCCAAGATAGACTCGGAGAAAACCCGGAGCGGTTTGCTCGCGAAGTCCGTGACGAACCCGGTTTACCAGCTCAGCGTGTTCGAACCGGAAACGGGTTTCTGGAGCGAGTTGCCTTTGGGACCCGAACTCGCTTCCGGTTTACCTATGTTCTGTCAGATAGCAGGTGTCGGGTACGATCTCGTCGTAATGGGAGGGTGGGACCCAGATTCGTGGAAAGCGTCGAATTCGGTTTTTATCTATAACTTCCTGTCGGCTAAGTGGCGCCGTGGGGCCGACATGCCCGGTGGGCCCCGCGTGTTTTTCGCGTGCGCGTCGGATCGTGATCGTAGGGTGTACGTCGCGGGCGGGCACGACGAGGAGAAAAACGCGCTGAGGTCAGCGCTTGCGTATGACGTGGCCAACGACGTGTGGGTCCCGGTCCCCGACATGGCCAGGGAGCGCGACGAGTGCAAGGCCGTGTTCCGCGGCGGCGCGCTCTGCGTCGTCGGCGGGTACTGCACGGAGATGCAGGGGCGGTTCGAGCGGAGCGTGGAGGTTTTCGATGTTGCCGCGTGGAAGTGGGGCCCCGTGGAGGAAGAGTTCTTGGATGTGGCCGCGTGTCCGCGCACATGCGTGGACGGTGGGGATGCGGAGGGGAGAATGTACATGTGTCGTGGCGGTGACGTGGTGGCATTGCAGGGCGACACGTGGCGGAAGGTTGCAAATGTGCCGGTTGAGATACGGAACGTTGCGTGCGTGGGAGTGTGGGAAGGGGCGTTGTTGGTGATTGGGTCGAATGGGTTCGGGGAACCGCATGTGGGCTTTGTGTTGGATCTTAAGAGTGGGGCTTGGACTAAACTCGTGAGCCCCGAGGAGTACACCGGACACGTGCAATCTGGTTGCCTTCTGGAAATTTAA 1080 0.5963 MELISGLPEDVARDCLIRVPYQQFPAVASVCKGWNTEIHSPEFHRRRKTTKHAQKILVTVQSKIDSEKTRSGLLAKSVTNPVYQLSVFEPETGFWSELPLGPELASGLPMFCQIAGVGYDLVVMGGWDPDSWKASNSVFIYNFLSAKWRRGADMPGGPRVFFACASDRDRRVYVAGGHDEEKNALRSALAYDVANDVWVPVPDMARERDECKAVFRGGALCVVGGYCTEMQGRFERSVEVFDVAAWKWGPVEEEFLDVAACPRTCVDGGDAEGRMYMCRGGDVVALQGDTWRKVANVPVEIRNVACVGVWEGALLVIGSNGFGEPHVGFVLDLKSGAWTKLVSPEEYTGHVQSGCLLEI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0175 359 Pfam F-box domain 4 45 IPR001810 GO:0005515
Ssu8g0175 359 Gene3D - 44 352 IPR015915 GO:0005515
Ssu8g0175 359 SUPERFAMILY F-box domain 3 53 IPR036047 GO:0005515
Ssu8g0175 359 SUPERFAMILY Kelch motif 80 341 IPR015915 GO:0005515
Ssu8g0175 359 Pfam Kelch motif 109 159 - -
Ssu8g0175 359 SMART kelc_smart 171 218 IPR006652 GO:0005515
Ssu8g0175 359 SMART kelc_smart 120 168 IPR006652 GO:0005515
Ssu8g0175 359 Pfam Kelch motif 169 204 IPR006652 GO:0005515
Ssu8g0175 359 PANTHER OS02G0208700 PROTEIN 1 359 IPR044595 GO:0080037|GO:2000762
Ssu8g0175 359 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0175 Ssu-Chr8 2679001 2680080 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0175 - - gmx:100786398 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0175 8 2679001 2680080 Ssu4g3385 4 84272209 84273279 PCT