Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3385 ATGGAGTTGATTTCTGGTCTACCAGAGGACCTAGCCCGAGACTGTTTGATTCGGGTTTCGTACCACCAGTTCCCCACGGTGGCGTCCGTGTGCAAAGGGTGGAAAGCGGAGATTCTCTCGCCGGAGTTCCACCGTCGACGGCGTAGCACAGGGCAAGCCCGGAAGGTTCTCGTGATGGTCCAAGCACGCGTCGAACCTGAACCGGGAATCGGTTCGACCAAGCGCGTCACGAACCCGGTTTACCGGCTCAGCGTGTTCGAACCGGAAACGGGTAACTGGACCGAGCTTCCGCCTCCGCCCGAGTTTCACTCCGGGTTACCCATGTTCTGTCAGTTAGTGGGTGTCGGGTACGATTTGGTGATGTTGGGCGGGTTGGACCCGAATTCTTGGGAATCATCGAATTCGGTGTTTGTCTATAATTTCTTGTCGGCGAAGTGGCGCCGCGCGGCGGACATGCCGGGTGGGCCCCGCACGTTCTTCGCGTGCGCGTCGGACTCCGAGGGGACAGTTTTTGTCGCCGGCGGACACGACAACGAGAAGAACGCGCTGCGGTCGGCGCTGGCCTACGACGTGGCGGCGGACCGGTGGGTTCCGCTGCCGGACATGGCGGCGGAGCGCGACGAGTGCAAGGGGTTGTTCCGCCGCGGGCGGTTCGTAGCCGTCGGGGGTTACCCGACGGACATGCAGGGAAGGTTCGAGAGGAGCGCGGAGGCGTTCGATCCCGCCACGTGGAGTTGGGGCCCAGTGGAGGAGGACTTCTTGGATTGCGCCACGTGTCCGAGGACGTTCGTGGACGGTGGCGATGACGAGGCGGTGTACTTGTGCTGCGGCGGGGACTTGAGTACCATGCGGGGGGACACGTGGCAGAAGATGGCGACGGTACCGGGGGACGTGCGCAACGTGGCGTACGTTGGGGCGTTTGATGGGACGCTGGTAGTGATTGGATCCAGCGGGTATGGTGAAGCCCACGTGGGTTTTACTTTCGATGTGAAGAGTTGCAACTGGAGAAAACTTGAGAGCCCACAAGGGTTCAGGGGCCACGTCCAAACCGGTTATGTCTTGGAGATTTAG 1071 0.6144 MELISGLPEDLARDCLIRVSYHQFPTVASVCKGWKAEILSPEFHRRRRSTGQARKVLVMVQARVEPEPGIGSTKRVTNPVYRLSVFEPETGNWTELPPPPEFHSGLPMFCQLVGVGYDLVMLGGLDPNSWESSNSVFVYNFLSAKWRRAADMPGGPRTFFACASDSEGTVFVAGGHDNEKNALRSALAYDVAADRWVPLPDMAAERDECKGLFRRGRFVAVGGYPTDMQGRFERSAEAFDPATWSWGPVEEDFLDCATCPRTFVDGGDDEAVYLCCGGDLSTMRGDTWQKMATVPGDVRNVAYVGAFDGTLVVIGSSGYGEAHVGFTFDVKSCNWRKLESPQGFRGHVQTGYVLEI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3385 356 Pfam F-box domain 4 45 IPR001810 GO:0005515
Ssu4g3385 356 SUPERFAMILY F-box domain 3 48 IPR036047 GO:0005515
Ssu4g3385 356 Pfam Kelch motif 167 202 IPR006652 GO:0005515
Ssu4g3385 356 Gene3D - 44 350 IPR015915 GO:0005515
Ssu4g3385 356 Pfam Kelch motif 107 157 - -
Ssu4g3385 356 PANTHER OS02G0208700 PROTEIN 1 356 IPR044595 GO:0080037|GO:2000762
Ssu4g3385 356 SUPERFAMILY Kelch motif 78 342 IPR015915 GO:0005515
Ssu4g3385 356 SMART kelc_smart 118 166 IPR006652 GO:0005515
Ssu4g3385 356 SMART kelc_smart 169 216 IPR006652 GO:0005515
Ssu4g3385 356 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3385 Ssu-Chr4 84272209 84273279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3385 4 255 EF-hand Containing Proteins AT4G39560 27.273 3.41e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3385 - - gmx:100796602 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3385 4 84272209 84273279 Ssu4g3385 4 84272209 84273279 ECH
Ssu8g0175 8 2679001 2680080 Ssu4g3385 4 84272209 84273279 PCT