Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0164 ATGCCTTCACTCTCAGAAGCCTACCGAGCCCACCCCGTGCATGTTCAGCACAAGCACCCTGACTTAAACTCTCTACAGGAACTCCCCGAATCTTACACCTGGACACACCTCGATGATCACACTAATTACCCTTCCAATTGTGGCGTGAACGAGAGTGTCCCCGTTATTGATCTCAAAGACCCAAATGCTTCAAAGTTGATAGGCCATGCATGCATGACTTGGGGAGTGTACCAAGTGGTGAACCATGGCTTACCCATGAGCCTCCTCGATGACATTCAATGGGTTGGAGAGACCCTcttctctcttccttctctcCAAAAGCACAAAGCTGCTCGTTCCCCAGACGGCGTTTCAGGCTATGGCCTCGCTCGCATCTCTTGCTTCTTCCCCAAACTCATGTGGTCTGAGGGATTCACAATTGTTGGGTCACCTCTTGAGCATTTTCGCCAACTATGGCCCCAAGATTACGACAAATACTGTGATATTGTCACGCAATATGATGAAACCATGAAAAAGCTAGCGGGAAAGCTGATGTGGCTCATGTTGGATTCTCTGGGTATTACAAAGGAAGACCTCAAATGGGCCGGCTCAAAAGGCCAATTCAAAAAGACTTGCGCTGCCTTGCAACTGAACTCCTACCCGACTTGTCCGGATCCGGATCGGGCCATGGGTCTCGCCGCCCACACTGACTCCACCCTTCTCACAATTCTTTACCAAAACAACATCAGCGGGTTGCAGGTTCGCCGGAAAGGCACCGGATGGATGACGGTGCCACCACTCCCCGGAGGGCTTGTGATTAATGTGGGCGACCTCCTCCACATTTTGTCAAACGGGTTGTACCCGAGTGTGCTCCATCGGGTGCTAGTGAACCGGATCCACCACCGGCTTTCAGTTGCCTATTTGTGTGGGCCCCCGCCTAGTGTGGAGATCTGTCCACATGAGAAGTTAGTAGGCCCAAGTCAGCCTCCCCTTTATAGGGCAGTGACTTGGAATGAGTACCTTGGCACCAAAGCAAAGCATTTCAACAAAGCACTCTCAACCGTTCGGCTTTGCACACCTATAGGTGGTTTGTTTGATGTAAGCGAGTCTCACAGAAATAGTGAGCAAGTGGGCTAG 1116 0.5036 MPSLSEAYRAHPVHVQHKHPDLNSLQELPESYTWTHLDDHTNYPSNCGVNESVPVIDLKDPNASKLIGHACMTWGVYQVVNHGLPMSLLDDIQWVGETLFSLPSLQKHKAARSPDGVSGYGLARISCFFPKLMWSEGFTIVGSPLEHFRQLWPQDYDKYCDIVTQYDETMKKLAGKLMWLMLDSLGITKEDLKWAGSKGQFKKTCAALQLNSYPTCPDPDRAMGLAAHTDSTLLTILYQNNISGLQVRRKGTGWMTVPPLPGGLVINVGDLLHILSNGLYPSVLHRVLVNRIHHRLSVAYLCGPPPSVEICPHEKLVGPSQPPLYRAVTWNEYLGTKAKHFNKALSTVRLCTPIGGLFDVSESHRNSEQVG 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0164 371 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 3 352 - -
Ssu8g0164 371 SUPERFAMILY Clavaminate synthase-like 16 341 - -
Ssu8g0164 371 PANTHER GIBBERELLIN 3-BETA-DIOXYGENASE 1-LIKE 3 352 - -
Ssu8g0164 371 Pfam non-haem dioxygenase in morphine synthesis N-terminal 53 153 IPR026992 -
Ssu8g0164 371 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 203 304 IPR005123 -
Ssu8g0164 371 Gene3D - 15 335 IPR027443 -
Ssu8g0164 371 Pfam 2OG-Fe(II) oxygenase superfamily 208 304 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0164 Ssu-Chr8 2477879 2479444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0164 53 345 Glycosyltransferase AT5G59530 31.230 2.76e-38 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0164 K04124 - gmx:100798572 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0164 8 2477879 2479444 Ssu8g0164 8 2477879 2479444 ECH
Ssu8g0164 8 2477879 2479444 Ssu4g3392 4 84491597 84493383 PCT